Physiological and transcriptomic responses to fishmeal-based diet and rapeseed meal-based diet in two strains of gibel carp (Carassius gibelio)

Effects of carbon sources and plant protein levels in a biofloc system on growth performance, and the immune and antioxidant status of Nile tilapia ( Oreochromis niloticus )

(2017) Abdallah Tageldien Mansour et al.   FISH & SHELLFISH IMMUNOLOGY

Effects of canola meal on growth, feed utilisation, plasma biochemistry, histology of digestive organs and hepatic gene expression of barramundi (Asian seabass; Lates calcarifer )

(2016) Diu Thi Ngo et al.   AQUACULTURE

Adaptive capacities from survival to stress responses of two isogenic lines of rainbow trout fed a plant-based diet

(2016) B. Sadoul et al.   Scientific Reports

Nitrogen utilization from diets with refined and blended poultry by-products as partial fish meal replacements in diets for low-salinity cultured Florida pompano, Trachinotus carolinus

(2015) Marty Riche   AQUACULTURE

Effect of substitution of dietary fishmeal by soya bean meal on different sizes of gibel carp (Carassius auratus gibelio): nutrient digestibility, growth performance, body composition and morphometry

(2015) H. Liu et al.   AQUACULTURE NUTRITION

Effects of dietary purified rapeseed protein concentrate on hepatic gene expression in juvenile turbot (Psetta maxima)

(2015) B.T. Hermann et al.   AQUACULTURE NUTRITION

Effects of replacing soybean meal with rubber seed meal on growth, antioxidant capacity, non-specific immune response, and resistance to Aeromonas hydrophila in tilapia (Oreochromis niloticus × O. aureus)

(2015) Junming Deng et al.   FISH & SHELLFISH IMMUNOLOGY

Comparative analysis of the hepatopancreas transcriptome of grass carp (Ctenopharyngodon idellus) fed with lard oil and fish oil diets

(2015) Jing-Jing Tian et al.   GENE

Responses to fishmeal and soybean meal-based diets by three kinds of larval carps of different food habits

(2014) C. Wang et al.   AQUACULTURE NUTRITION

Comparative transcriptomics of Atlantic Salmo salar, chum Oncorhynchus keta and pink salmon O. gorbuscha during infections with salmon lice Lepeophtheirus salmonis

(2014) Ben JG Sutherland et al.   BMC GENOMICS

Effects of dietary amino acid patterns on growth and protein metabolism of large yellow croaker (Larimichthys crocea) larvae

(2013) Wenjie Li et al.   AQUACULTURE

Growth performance, biochemical indices and hepatopancreatic function of grass carp, Ctenopharyngodon idellus, would be impaired by dietary rapeseed meal

(2013) Qingsong Tan et al.   AQUACULTURE

Effects of dietary plant meal and soya-saponin supplementation on intestinal and hepatic lipid droplet accumulation and lipoprotein and sterol metabolism in Atlantic salmon (Salmo salar L.)

(2013) Min Gu et al.   BRITISH JOURNAL OF NUTRITION

TNF and EPO: major players in the innate immune response: their discovery

(2012) Anthony Cerami   ANNALS OF THE RHEUMATIC DISEASES

Dietary protein source significantly alters growth performance, plasma variables and hepatic gene expression in rainbow trout (Oncorhynchus mykiss) fed amino acid balanced diets

(2012) Jurij Wacyk et al.   AQUACULTURE

Effects of dietary rapeseed meal on growth performance, digestion and protein metabolism in relation to gene expression of juvenile cobia (Rachycentron canadum)

(2012) Yiwen Luo et al.   AQUACULTURE

Transcriptomic and physiological responses to fishmeal substitution with plant proteins in formulated feed in farmed Atlantic salmon (Salmo salar)

(2012) Luca Tacchi et al.   BMC GENOMICS

Effects of genotype and dietary fish oil replacement with vegetable oil on the intestinal transcriptome and proteome of Atlantic salmon (Salmo salar)

(2012) Sofia Morais et al.   BMC GENOMICS

Transcriptional regulation of cholesterol and bile acid metabolism after dietary soyabean meal treatment in Atlantic salmon (Salmo salar L.)

(2012) Trond M. Kortner et al.   BRITISH JOURNAL OF NUTRITION

Expression of complement component C7 and involvement in innate immune responses to bacteria in grass carp

(2012) Yubang Shen et al.   FISH & SHELLFISH IMMUNOLOGY

The Innate Immune-Related Genes in Catfish

(2012) Lei Gao et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Plant-based diet in rainbow trout (Oncorhynchus mykiss Walbaum): Are there genotype-diet interactions for main production traits when fish are fed marine vs. plant-based diets from the first meal?

(2011) Richard Le Boucher et al.   AQUACULTURE

Replacement of fish meal with a matrix of organic plant proteins in organic trout (Oncorhynchus mykiss) feed, and the effects on nutrient utilization and fish performance

(2011) Ivar Lund et al.   AQUACULTURE

Increasing dietary plant proteins affects growth performance and ammonia excretion but not digestibility and gut histology in turbot (Psetta maxima) juveniles

(2011) Alessio Bonaldo et al.   AQUACULTURE

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Genotype-specific responses in Atlantic salmon (Salmo salar) subject to dietary fish oil replacement by vegetable oil: a liver transcriptomic analysis

(2011) Sofia Morais et al.   BMC GENOMICS

Effects of the total replacement of fish-based diet with plant-based diet on the hepatic transcriptome of two European sea bass (Dicentrarchus labrax) half-sibfamilies showing different growth rates with the plant-based diet

(2011) Florian Geay et al.   BMC GENOMICS

Diet × genotype interactions in hepatic cholesterol and lipoprotein metabolism in Atlantic salmon (Salmo salar) in response to replacement of dietary fish oil with vegetable oil

(2011) Sofia Morais et al.   BRITISH JOURNAL OF NUTRITION

Transcriptomic analyses of intestinal gene expression of juvenile Atlantic cod (Gadus morhua) fed diets with Camelina oil as replacement for fish oil

(2011) Sofia Morais et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

Effects of dietary arachidonic acid on growth performance, survival, immune response and tissue fatty acid composition of juvenile Japanese seabass, Lateolabrax japonicus

(2010) Houguo Xu et al.   AQUACULTURE

Effects of dietary canola meal on growth performance, digestion and metabolism of Japanese seabass, Lateolabrax japonicus

(2010) Zhenyan Cheng et al.   AQUACULTURE

Effects of increasing replacement of dietary fishmeal with plant protein sources on growth performance and body lipid composition of Atlantic salmon (Salmo salar L.)

(2010) J. Pratoomyot et al.   AQUACULTURE

Protein and amino acid nutrition and metabolism in fish: current knowledge and future needs

(2010) Sadasivam J Kaushik et al.   AQUACULTURE RESEARCH

Important antinutrients in plant feedstuffs for aquaculture: an update on recent findings regarding responses in salmonids

(2010) Åshild Krogdahl et al.   AQUACULTURE RESEARCH

A first insight into genotype × diet interactions in European sea bass (Dicentrarchus labrax L. 1756) in the context of plant-based diet use

(2010) Richard Le Boucher et al.   AQUACULTURE RESEARCH

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Senegalese sole juveniles (Solea senegalensis Kaup, 1858) grow equally well on diets devoid of fish meal provided the dietary amino acids are balanced

(2009) J.M.G. Silva et al.   AQUACULTURE

Substitution of fish meal with plant protein sources and energy budget for white shrimp Litopenaeus vannamei (Boone, 1931)

(2009) J.A. Suárez et al.   AQUACULTURE

Evidence of genotype–diet interactions in the response of rainbow trout (Oncorhynchus mykiss) clones to a diet with or without fishmeal at early growth

(2009) Mathilde Dupont-Nivet et al.   AQUACULTURE

Differential gene expression after total replacement of dietary fish meal and fish oil by plant products in rainbow trout (Oncorhynchus mykiss) liver

(2009) S. Panserat et al.   AQUACULTURE

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Family growth response to fishmeal and plant-based diets shows genotype×diet interaction in rainbow trout (Oncorhynchus mykiss)

(2008) Lindsey R. Pierce et al.   AQUACULTURE

Modifications of digestive enzymes in trout (Oncorhynchus mykiss) and sea bream (Sparus aurata) in response to dietary fish meal replacement by plant protein sources

(2008) E. Santigosa et al.   AQUACULTURE

Overexpression of ornithine aminotransferase: consequences on amino acid homeostasis

(2008) Gabrielle Ventura et al.   BRITISH JOURNAL OF NUTRITION

Expression profiles of matrix metalloproteinase 9 in teleost fish provide evidence for its active role in initiation and resolution of inflammation

(2008) Magdalena Chadzinska et al.   IMMUNOLOGY