A systems-level approach for metabolic engineering of yeast cell factories
Published 2011 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
A systems-level approach for metabolic engineering of yeast cell factories
Authors
Keywords
-
Journal
FEMS YEAST RESEARCH
Volume 12, Issue 2, Pages 228-248
Publisher
Oxford University Press (OUP)
Online
2011-12-22
DOI
10.1111/j.1567-1364.2011.00779.x
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Enzymatic glutathione production using metabolically engineered Saccharomyces cerevisiae as a whole-cell biocatalyst
- (2011) Hideyo Yoshida et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Improving ethanol fermentation performance of Saccharomyces cerevisiae in very high-gravity fermentation through chemical mutagenesis and meiotic recombination
- (2011) Jing-Jing Liu et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Use of chemometrics in the selection of a Saccharomyces cerevisiae expression system for recombinant cyprosin B production
- (2011) P. N. Sampaio et al. BIOTECHNOLOGY LETTERS
- Whole genome sequencing of Saccharomyces cerevisiae: from genotype to phenotype for improved metabolic engineering applications
- (2011) José Otero et al. BMC GENOMICS
- Codon usage variability determines the correlation between proteome and transcriptome fold changes
- (2011) Roberto Olivares-Hernández et al. BMC Systems Biology
- Statistical Inference Methods for Sparse Biological Time Series Data
- (2011) Juliet Ndukum et al. BMC Systems Biology
- Expanding a dynamic flux balance model of yeast fermentation to genome-scale
- (2011) Felipe A Vargas et al. BMC Systems Biology
- Computational protein design: engineering molecular diversity, nonnatural enzymes, nonbiological cofactor complexes, and membrane proteins
- (2011) Jeffery G Saven CURRENT OPINION IN CHEMICAL BIOLOGY
- Batch and continuous culture-based selection strategies for acetic acid tolerance in xylose-fermenting Saccharomyces cerevisiae
- (2011) Jeremiah Wright et al. FEMS YEAST RESEARCH
- Oral treatment with Saccharomyces cerevisiae strain UFMG 905 modulates immune responses and interferes with signal pathways involved in the activation of inflammation in a murine model of typhoid fever
- (2011) Flaviano S. Martins et al. INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY
- Metabolomics, Pathway Regulation, and Pathway Discovery
- (2011) Guo-Fang Zhang et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Bridging the Gap between Fluxomics and Industrial Biotechnology
- (2011) Xueyang Feng et al. JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY
- Metabolic and bioprocess engineering for production of selenized yeast with increased content of seleno-methylselenocysteine
- (2011) Valeria Mapelli et al. METABOLIC ENGINEERING
- An in vivo data-driven framework for classification and quantification of enzyme kinetics and determination of apparent thermodynamic data
- (2011) André B. Canelas et al. METABOLIC ENGINEERING
- Targeted proteomics for metabolic pathway optimization: Application to terpene production
- (2011) Alyssa M. Redding-Johanson et al. METABOLIC ENGINEERING
- Metabolic pathway engineering based on metabolomics confers acetic and formic acid tolerance to a recombinant xylose-fermenting strain of Saccharomyces cerevisiae
- (2011) Tomohisa Hasunuma et al. Microbial Cell Factories
- Mapping the interaction of Snf1 with TORC1 in Saccharomyces cerevisiae
- (2011) J. Zhang et al. Molecular Systems Biology
- XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast
- (2011) E. L. van Dijk et al. NATURE
- Engineering ligand-responsive RNA controllers in yeast through the assembly of RNase III tuning modules
- (2011) Andrew H. Babiskin et al. NUCLEIC ACIDS RESEARCH
- Synthetic RNA modules for fine-tuning gene expression levels in yeast by modulating RNase III activity
- (2011) Andrew H. Babiskin et al. NUCLEIC ACIDS RESEARCH
- Linking Genotype and Phenotype of Saccharomyces cerevisiae Strains Reveals Metabolic Engineering Targets and Leads to Triterpene Hyper-Producers
- (2011) Karina M. Madsen et al. PLoS One
- The Stress Response Factors Yap6, Cin5, Phd1, and Skn7 Direct Targeting of the Conserved Co-Repressor Tup1-Ssn6 in S. cerevisiae
- (2011) Sean E. Hanlon et al. PLoS One
- Unravelling evolutionary strategies of yeast for improving galactose utilization through integrated systems level analysis
- (2011) K.-K. Hong et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Engineered riboswitches: Overview, problems and trends
- (2011) Beatrix Suess et al. RNA Biology
- Synthetic Biology Moving into the Clinic
- (2011) W. C. Ruder et al. SCIENCE
- Pronounced and extensive microtubule defects in a Saccharomyces cerevisiae DIS3 mutant
- (2011) Sarah B. Smith et al. YEAST
- Metabolomics: a second-generation platform for crop and food analysis
- (2011) Louise VT Shepherd et al. Bioanalysis
- Beyond the Transcripts: What Controls Protein Variation?
- (2011) Laura Straub PLOS BIOLOGY
- Genetic Variation Shapes Protein Networks Mainly through Non-transcriptional Mechanisms
- (2011) Eric J. Foss et al. PLOS BIOLOGY
- Reciprocal Sign Epistasis between Frequently Experimentally Evolved Adaptive Mutations Causes a Rugged Fitness Landscape
- (2011) Daniel J. Kvitek et al. PLoS Genetics
- Sensitive and Convenient Yeast Reporter Assay for High-Throughput Analysis by Using a Secretory Luciferase fromCypridina noctiluca
- (2010) Yuki Tochigi et al. ANALYTICAL CHEMISTRY
- Metabolic Engineering ofSaccharomyces cerevisiaefor Production of Eicosapentaenoic Acid, Using a Novel Δ5-Desaturase fromParamecium tetraurelia
- (2010) Sabina Tavares et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Diversion of Flux toward Sesquiterpene Production inSaccharomyces cerevisiaeby Fusion of Host and Heterologous Enzymes
- (2010) Line Albertsen et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Enhanced Production of a Plant Monoterpene by Overexpression of the 3-Hydroxy-3-Methylglutaryl Coenzyme A Reductase Catalytic Domain in Saccharomyces cerevisiae
- (2010) J. Rico et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Production of tranilast [N-(3′,4′-dimethoxycinnamoyl)-anthranilic acid] and its analogs in yeast Saccharomyces cerevisiae
- (2010) Aymerick Eudes et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Engineering of glycerol utilization pathway for ethanol production by Saccharomyces cerevisiae
- (2010) Kyung Ok Yu et al. BIORESOURCE TECHNOLOGY
- Integrative analysis using proteome and transcriptome data from yeast to unravel regulatory patterns at post-transcriptional level
- (2010) Roberto Olivares-Hernández et al. BIOTECHNOLOGY AND BIOENGINEERING
- Improved galactose fermentation of Saccharomyces cerevisiae through inverse metabolic engineering
- (2010) Ki-Sung Lee et al. BIOTECHNOLOGY AND BIOENGINEERING
- Implementation of communication-mediating domains for non-ribosomal peptide production in Saccharomyces cerevisiae
- (2010) Verena Siewers et al. BIOTECHNOLOGY AND BIOENGINEERING
- Optimizing pentose utilization in yeast: the need for novel tools and approaches
- (2010) Eric Young et al. Biotechnology for Biofuels
- Fast sampling for quantitative microbial metabolomics
- (2010) Walter M van Gulik CURRENT OPINION IN BIOTECHNOLOGY
- Metabolomics in systems microbiology
- (2010) Marshall Louis Reaves et al. CURRENT OPINION IN BIOTECHNOLOGY
- Random Mutagenesis Methods for In Vitro Directed Enzyme Evolution
- (2010) Nikolaos Labrou CURRENT PROTEIN & PEPTIDE SCIENCE
- CE-MS for metabolomics: Developments and applications in the period 2008-2010
- (2010) Rawi Ramautar et al. ELECTROPHORESIS
- Use of genome-scale metabolic models for understanding microbial physiology
- (2010) Liming Liu et al. FEBS LETTERS
- Differential glucose repression in common yeast strains in response to HXK2 deletion
- (2010) Anne Kümmel et al. FEMS YEAST RESEARCH
- Intracellular characterization of aerobic glucose metabolism in seven yeast species by 13C flux analysis and metabolomics
- (2010) Stefan Christen et al. FEMS YEAST RESEARCH
- Exploiting Natural Variation in Saccharomyces cerevisiae to Identify Genes for Increased Ethanol Resistance
- (2010) J. A. Lewis et al. GENETICS
- Feed-Forward Regulation of a Cell Fate Determinant by an RNA-Binding Protein Generates Asymmetry in Yeast
- (2010) J. J. Wolf et al. GENETICS
- Optimizing the secondary structure of human papillomavirus type 16 L1 mRNA enhances L1 protein expression in Saccharomyces cerevisiae
- (2010) Hyoung Jin Kim et al. JOURNAL OF BIOTECHNOLOGY
- RAPYD — Rapid Annotation Platform for Yeast Data
- (2010) Jessica Schneider et al. JOURNAL OF BIOTECHNOLOGY
- Metabolic engineering of Saccharomyces cerevisiae for the biotechnological production of succinic acid
- (2010) Andreas M. Raab et al. METABOLIC ENGINEERING
- Improved vanillin production in baker's yeast through in silico design
- (2010) Ana Brochado et al. Microbial Cell Factories
- The mechanism of eukaryotic translation initiation and principles of its regulation
- (2010) Richard J. Jackson et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- BioMet Toolbox: genome-wide analysis of metabolism
- (2010) M. Cvijovic et al. NUCLEIC ACIDS RESEARCH
- Cloning of casbene and neocembrene synthases from Euphorbiaceae plants and expression in Saccharomyces cerevisiae
- (2010) James Kirby et al. PHYTOCHEMISTRY
- Manufacturing Molecules Through Metabolic Engineering
- (2010) J. D. Keasling SCIENCE
- Creation of a Bacterial Cell Controlled by a Chemically Synthesized Genome
- (2010) D. G. Gibson et al. SCIENCE
- Characterization of different promoters for designing a new expression vector in Saccharomyces cerevisiae
- (2010) Siavash Partow et al. YEAST
- Integrated multilaboratory systems biology reveals differences in protein metabolism between two reference yeast strains
- (2010) André B. Canelas et al. Nature Communications
- OptForce: An Optimization Procedure for Identifying All Genetic Manipulations Leading to Targeted Overproductions
- (2010) Sridhar Ranganathan et al. PLoS Computational Biology
- How to make a minimal genome for synthetic minimal cell
- (2010) Liu-yan Zhang et al. Protein & Cell
- Genome-Wide Identification of Saccharomyces cerevisiae Genes Required for Maximal Tolerance to Ethanol
- (2009) M. C. Teixeira et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Elimination of Glycerol Production in Anaerobic Cultures of a Saccharomyces cerevisiae Strain Engineered To Use Acetic Acid as an Electron Acceptor
- (2009) V. G. Medina et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Enhancing the flux of D-glucose to the pentose phosphate pathway in Saccharomyces cerevisiae for the production of D-ribose and ribitol
- (2009) Mervi H. Toivari et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Construction of a xylose-fermenting Saccharomyces cerevisiae strain by combined approaches of genetic engineering, chemical mutagenesis and evolutionary adaptation
- (2009) Enkai Liu et al. BIOCHEMICAL ENGINEERING JOURNAL
- Constraints-based genome-scale metabolic simulation for systems metabolic engineering
- (2009) Jong Myoung Park et al. BIOTECHNOLOGY ADVANCES
- Directed evolution of a secretory leader for the improved expression of heterologous proteins and full-length antibodies inSaccharomyces cerevisiae
- (2009) J. Andy Rakestraw et al. BIOTECHNOLOGY AND BIOENGINEERING
- Industrial biotechnology: Tools and applications
- (2009) Weng Lin Tang et al. Biotechnology Journal
- Direct spectroscopic (FTIR) detection of intraspecific binary contaminations in yeast cultures
- (2009) Paolo Rellini et al. FEMS YEAST RESEARCH
- Systems-Level Engineering of Nonfermentative Metabolism in Yeast
- (2009) C. J. Kennedy et al. GENETICS
- Expression of hepatitis B surface antigen S domain in recombinant Saccharomyces cerevisiae using GAL1 promoter
- (2009) Eun-Jeong Kim et al. JOURNAL OF BIOTECHNOLOGY
- A comprehensive method for the quantification of the non-oxidative pentose phosphate pathway intermediates in Saccharomyces cerevisiae by GC–IDMS
- (2009) Chiara Cipollina et al. JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES
- Heterologous production of non-ribosomal peptide LLD-ACV in Saccharomyces cerevisiae
- (2009) Verena Siewers et al. METABOLIC ENGINEERING
- Enhancing sesquiterpene production in Saccharomyces cerevisiae through in silico driven metabolic engineering
- (2009) Mohammad A. Asadollahi et al. METABOLIC ENGINEERING
- OpenFLUX: efficient modelling software for 13C-based metabolic flux analysis
- (2009) Lake-Ee Quek et al. Microbial Cell Factories
- Reconstruction of the yeast Snf1 kinase regulatory network reveals its role as a global energy regulator
- (2009) Renata Usaite et al. Molecular Systems Biology
- Synthetic protein scaffolds provide modular control over metabolic flux
- (2009) John E Dueber et al. NATURE BIOTECHNOLOGY
- A fast and efficient translational control system for conditional expression of yeast genes
- (2009) Peter Kötter et al. NUCLEIC ACIDS RESEARCH
- Strong Eukaryotic IRESs Have Weak Secondary Structure
- (2009) Xuhua Xia et al. PLoS One
- Isotope dilution quantification of ultratrace gamma-glutamyl-Se-methylselenocysteine species using HPLC with enhanced ICP–MS detection by ultrasonic nebulisation or carbon-loaded plasma
- (2008) Heidi Goenaga Infante et al. ANALYTICAL AND BIOANALYTICAL CHEMISTRY
- Engineered enzymes for chemical production
- (2008) Stephan Luetz et al. BIOTECHNOLOGY AND BIOENGINEERING
- Determination of the cytosolic free NAD/NADH ratio inSaccharomyces cerevisiaeunder steady-state and highly dynamic conditions
- (2008) André B. Canelas et al. BIOTECHNOLOGY AND BIOENGINEERING
- Appropriate sampling for intracellular amino acid analysis in five phylogenetically different yeasts
- (2008) Christoph J. Bolten et al. BIOTECHNOLOGY LETTERS
- De novo biosynthetic pathways: rational design of microbial chemical factories
- (2008) Kristala L Jones Prather et al. CURRENT OPINION IN BIOTECHNOLOGY
- Engineering of a mammalian O-glycosylation pathway in the yeast Saccharomyces cerevisiae: production of O-fucosylated epidermal growth factor domains
- (2008) Y. Chigira et al. GLYCOBIOLOGY
- Synthetic biology with RNA motifs
- (2008) Hirohide Saito et al. INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY
- Characterization of Global Yeast Quantitative Proteome Data Generated from the Wild-Type and Glucose RepressionSaccharomyces cerevisiaeStrains: The Comparison of Two Quantitative Methods
- (2008) Renata Usaite et al. JOURNAL OF PROTEOME RESEARCH
- Leakage-free rapid quenching technique for yeast metabolomics
- (2008) André B. Canelas et al. Metabolomics
- Metabolic engineering of Saccharomyces cerevisiae for the production of n-butanol
- (2008) Eric J Steen et al. Microbial Cell Factories
- Progress in Metabolic Engineering of Saccharomyces cerevisiae
- (2008) E. Nevoigt MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- RNA-Seq: a revolutionary tool for transcriptomics
- (2008) Zhong Wang et al. NATURE REVIEWS GENETICS
- DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways
- (2008) Zengyi Shao et al. NUCLEIC ACIDS RESEARCH
- Promoter library designed for fine-tuned gene expression in Pichia pastoris
- (2008) Franz S. Hartner et al. NUCLEIC ACIDS RESEARCH
- Application of systems biology for bioprocess development
- (2008) Jin Hwan Park et al. TRENDS IN BIOTECHNOLOGY
- Impact of systems biology on metabolic engineering ofSaccharomyces cerevisiae
- (2007) Jens Nielsen et al. FEMS YEAST RESEARCH
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started