Exploring the immediate and long-term impact on bacterial communities in soil amended with animal and urban organic waste fertilizers using pyrosequencing and screening for horizontal transfer of antibiotic resistance

Dynamics of Soil Bacterial Communities in Response to Repeated Application of Manure Containing Sulfadiazine

(2014) Guo-Chun Ding et al.   PLoS One

Investigating the Diversity of Pseudomonas spp. in Soil Using Culture Dependent and Independent Techniques

(2013) Lili Li et al.   CURRENT MICROBIOLOGY

Assessment of the specificity of Burkholderia and Pseudomonas qPCR assays for detection of these genera in soil using 454 pyrosequencing

(2012) Lasse Bergmark et al.   FEMS MICROBIOLOGY LETTERS

Antibiotic Resistance Is Prevalent in an Isolated Cave Microbiome

(2012) Kirandeep Bhullar et al.   PLoS One

Effects of fertilization with urban and agricultural organic wastes in a field trial – Waste imprint on soil microbial activity

(2012) Pernille Hasse Busk Poulsen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Effects of fertilization with urban and agricultural organic wastes in a field trial – Prokaryotic diversity investigated by pyrosequencing

(2012) Pernille H.B. Poulsen et al.   SOIL BIOLOGY & BIOCHEMISTRY

mvabund- anRpackage for model-based analysis of multivariate abundance data

(2012) Yi Wang et al.   Methods in Ecology and Evolution

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Microbial diversity of biofilm communities in microniches associated with the didemnid ascidian Lissoclinum patella

(2011) Lars Behrendt et al.   ISME Journal

Review of ‘emerging’ organic contaminants in biosolids and assessment of international research priorities for the agricultural use of biosolids

(2010) Bradley O. Clarke et al.   ENVIRONMENT INTERNATIONAL

Cu Exposure under Field Conditions Coselects for Antibiotic Resistance as Determined by a Novel Cultivation-Independent Bacterial Community Tolerance Assay

(2010) Jeanette Berg et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments

(2009) S. A. Bustin et al.   CLINICAL CHEMISTRY

Evidence of Increasing Antibiotic Resistance Gene Abundances in Archived Soils since 1940

(2009) Charles W. Knapp et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Historical evolution and current status of the taxonomy of genus Pseudomonas

(2009) Alvaro Peix et al.   INFECTION GENETICS AND EVOLUTION

Pseudomonas tuomuerensis sp. nov., isolated from a bird's nest

(2009) Y.-H. Xin et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genomics of secondary metabolite production by Pseudomonas spp.

(2009) Harald Gross et al.   NATURAL PRODUCT REPORTS

Antibiotic-Resistant Bugs in the 21st Century — A Clinical Super-Challenge

(2009) Cesar A. Arias et al.   NEW ENGLAND JOURNAL OF MEDICINE

Organic contaminants in sewage sludge (biosolids) and their significance for agricultural recycling

(2009) S. R. Smith   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES

A critical review of the bioavailability and impacts of heavy metals in municipal solid waste composts compared to sewage sludge

(2008) S SMITH   ENVIRONMENT INTERNATIONAL

Piggery manure used for soil fertilization is a reservoir for transferable antibiotic resistance plasmids

(2008) Chu Thi Thanh Binh et al.   FEMS MICROBIOLOGY ECOLOGY