Investigating the Diversity of Pseudomonas spp. in Soil Using Culture Dependent and Independent Techniques

Assessment of the specificity of Burkholderia and Pseudomonas qPCR assays for detection of these genera in soil using 454 pyrosequencing

(2012) Lasse Bergmark et al.   FEMS MICROBIOLOGY LETTERS

Variable Copy Number, Intra-Genomic Heterogeneities and Lateral Transfers of the 16S rRNA Gene in Pseudomonas

(2012) Josselin Bodilis et al.   PLoS One

Effects of fertilization with urban and agricultural organic wastes in a field trial – Prokaryotic diversity investigated by pyrosequencing

(2012) Pernille H.B. Poulsen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Characterization of bacterial populations in Danish raw milk cheeses made with different starter cultures by denaturating gradient gel electrophoresis and pyrosequencing

(2010) Wafa Masoud et al.   INTERNATIONAL DAIRY JOURNAL

Evaluation of different partial 16S rRNA gene sequence regions for phylogenetic analysis of microbiomes

(2010) Minseok Kim et al.   JOURNAL OF MICROBIOLOGICAL METHODS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Molecular analysis of diversity within the genus Pseudomonas in the lungs of cystic fibrosis patients

(2009) Trajko Spasenovski et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

Historical evolution and current status of the taxonomy of genus Pseudomonas

(2009) Alvaro Peix et al.   INFECTION GENETICS AND EVOLUTION

The rational exploration of microbial diversity

(2008) Christopher Quince et al.   ISME Journal