Development of a targeted metagenomic approach to study a genomic region involved in light harvesting in marineSynechococcus

A Gene Island with Two Possible Configurations Is Involved in Chromatic Acclimation in Marine Synechococcus

(2014) Florian Humily et al.   PLoS One

Ecology of uncultured Prochlorococcus clades revealed through single-cell genomics and biogeographic analysis

(2012) Rex R Malmstrom et al.   ISME Journal

Composition of the summer photosynthetic pico and nanoplankton communities in the Beaufort Sea assessed by T-RFLP and sequences of the 18S rRNA gene from flow cytometry sorted samples

(2012) Sergio Balzano et al.   ISME Journal

Phycoerythrin evolution and diversification of spectral phenotype in marine Synechococcus and related picocyanobacteria

(2012) R. Craig Everroad et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Fast, accurate error-correction of amplicon pyrosequences using Acacia

(2012) Lauren Bragg et al.   NATURE METHODS

Metagenomes of the Picoalga Bathycoccus from the Chile Coastal Upwelling

(2012) Daniel Vaulot et al.   PLoS One

Diversity and Distribution of Marine Synechococcus: Multiple Gene Phylogenies for Consensus Classification and Development of qPCR Assays for Sensitive Measurement of Clades in the Ocean

(2012) Nathan A. Ahlgren et al.   Frontiers in Microbiology

The Rare Bacterial Biosphere

(2011) Carlos Pedrós-Alió   Annual Review of Marine Science

Multi-locus sequence analysis, taxonomic resolution and biogeography of marine Synechococcus

(2011) Sophie Mazard et al.   ENVIRONMENTAL MICROBIOLOGY

Targeted metagenomics: a high-resolution metagenomics approach for specific gene clusters in complex microbial communities

(2011) Hikaru Suenaga   ENVIRONMENTAL MICROBIOLOGY

Whole-genome amplification (WGA) of marine photosynthetic eukaryote populations

(2011) Cécile Lepere et al.   FEMS MICROBIOLOGY ECOLOGY

Novel lineages of Prochlorococcus and Synechococcus in the global oceans

(2011) Sijun Huang et al.   ISME Journal

Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean

(2011) B. K. Swan et al.   SCIENCE

Single-Cell Genomics Reveals Organismal Interactions in Uncultivated Marine Protists

(2011) H. S. Yoon et al.   SCIENCE

Microbial Metagenomics: Beyond the Genome

(2010) Jack A. Gilbert et al.   Annual Review of Marine Science

Preparation of Genomic DNA from a Single Species of Uncultured Magnetotactic Bacterium by Multiple-Displacement Amplification

(2010) A. Arakaki et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Use of  flow cytometric sorting to better assess the diversity of small photosynthetic eukaryotes in the English Channel

(2010) Dominique Marie et al.   FEMS MICROBIOLOGY ECOLOGY

Significant CO2 fixation by small prymnesiophytes in the subtropical and tropical northeast Atlantic Ocean

(2010) Ludwig Jardillier et al.   ISME Journal

Terminal restriction fragment length measurement errors are affected mainly by fragment length, G+C nucleotide content and secondary structure melting point

(2010) Petra Bukovská et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Metabolic streamlining in an open-ocean nitrogen-fixing cyanobacterium

(2010) H. James Tripp et al.   NATURE

One Bacterial Cell, One Complete Genome

(2010) Tanja Woyke et al.   PLoS One

Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton

(2010) M. L. Cuvelier et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Primer on Metagenomics

(2010) John C. Wooley et al.   PLoS Computational Biology

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Temporal variation of Synechococcus clades at a coastal Pacific Ocean monitoring site

(2009) Vera Tai et al.   ISME Journal

Ecological Genomics of Marine Picocyanobacteria

(2009) D. J. Scanlan et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The microbial ocean from genomes to biomes

(2009) Edward F. DeLong   NATURE

Assembling the Marine Metagenome, One Cell at a Time

(2009) Tanja Woyke et al.   PLoS One

Whole Genome Amplification and De novo Assembly of Single Bacterial Cells

(2009) Sébastien Rodrigue et al.   PLoS One

Functional viral metagenomics and the next generation of molecular tools

(2009) Thomas Schoenfeld et al.   TRENDS IN MICROBIOLOGY

Revealing the uncultivated majority: combining DNA stable-isotope probing, multiple displacement amplification and metagenomic analyses of uncultivated Methylocystis in acidic peatlands

(2008) Yin Chen et al.   ENVIRONMENTAL MICROBIOLOGY

Marine methylotrophs revealed by stable-isotope probing, multiple displacement amplification and metagenomics

(2008) Josh D. Neufeld et al.   ENVIRONMENTAL MICROBIOLOGY

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION

High-resolution metagenomics targets specific functional types in complex microbial communities

(2008) Marina G Kalyuzhnaya et al.   NATURE BIOTECHNOLOGY

Unravelling the genomic mosaic of a ubiquitous genus of marine cyanobacteria

(2008) Alexis Dufresne et al.   GENOME BIOLOGY