Exploring links between pH and bacterial community composition in soils from the Craibstone Experimental Farm

AXIOME: automated exploration of microbial diversity

(2013) Michael DJ Lynch et al.   GigaScience

PANDAseq: paired-end assembler for illumina sequences

(2012) Andre P Masella et al.   BMC BIOINFORMATICS

Comparative genomic and physiological analysis provides insights into the role ofAcidobacteriain organic carbon utilization in Arctic tundra soils

(2012) Suman R. Rawat et al.   FEMS MICROBIOLOGY ECOLOGY

Targeted recovery of novel phylogenetic diversity from next-generation sequence data

(2012) Michael D J Lynch et al.   ISME Journal

Functional Biogeography of Ocean Microbes Revealed through Non-Negative Matrix Factorization

(2012) Xingpeng Jiang et al.   PLoS One

Bacterial community structure of contrasting soils underlying Bornean rain forests: Inferences from microarray and next-generation sequencing methods

(2012) Sabrina E. Russo et al.   SOIL BIOLOGY & BIOCHEMISTRY

Digging deeper to find unique microbial communities: The strong effect of depth on the structure of bacterial and archaeal communities in soil

(2012) Kathryn G. Eilers et al.   SOIL BIOLOGY & BIOCHEMISTRY

Denitrifying Bacteria from the Genus Rhodanobacter Dominate Bacterial Communities in the Highly Contaminated Subsurface of a Nuclear Legacy Waste Site

(2011) Stefan J. Green et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Generation of Multimillion-Sequence 16S rRNA Gene Libraries from Complex Microbial Communities by Assembling Paired-End Illumina Reads

(2011) Andrea K. Bartram et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A non-negative matrix factorization framework for identifying modular patterns in metagenomic profile data

(2011) Xingpeng Jiang et al.   JOURNAL OF MATHEMATICAL BIOLOGY

Indigenous Populations of Three Closely Related Lysobacter spp. in Agricultural Soils Using Real-Time PCR

(2011) Joeke Postma et al.   MICROBIAL ECOLOGY

Ecophysiology of Fe-Cycling Bacteria in Acidic Sediments

(2010) S. Lu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes

(2010) Haiyan Chu et al.   ENVIRONMENTAL MICROBIOLOGY

UniFrac: an effective distance metric for microbial community comparison

(2010) Catherine Lozupone et al.   ISME Journal

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Soil pH regulates the abundance and diversity of Group 1.1c Crenarchaeota

(2009) Laura E. Lehtovirta et al.   FEMS MICROBIOLOGY ECOLOGY

A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses

(2009) Ryan T Jones et al.   ISME Journal

Comparative Analysis of Pyrosequencing and a Phylogenetic Microarray for Exploring Microbial Community Structures in the Human Distal Intestine

(2009) Marcus J. Claesson et al.   PLoS One

The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria

(2008) Graeme W. Nicol et al.   ENVIRONMENTAL MICROBIOLOGY

Resource availability influences the diversity of a functional group of heterotrophic soil bacteria

(2008) Silke Langenheder et al.   ENVIRONMENTAL MICROBIOLOGY

Improved group-specific PCR primers for denaturing gradient gel electrophoresis analysis of the genetic diversity of complex microbial communities

(2008) Martin Mühling et al.   ISME Journal