Implementing sponge physiological and genomic information to enhance the diversity of its culturable associated bacteria

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Calyxamides A and B, Cytotoxic Cyclic Peptides from the Marine Sponge Discodermia calyx

(2012) Miki Kimura et al.   JOURNAL OF NATURAL PRODUCTS

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Trends in the Discovery of New Marine Natural Products from Invertebrates over the Last Two Decades – Where and What Are We Bioprospecting?

(2012) Miguel Costa Leal et al.   PLoS One

Groundtruthing Next-Gen Sequencing for Microbial Ecology–Biases and Errors in Community Structure Estimates from PCR Amplicon Pyrosequencing

(2012) Charles K. Lee et al.   PLoS One

Functional equivalence and evolutionary convergence in complex communities of microbial sponge symbionts

(2012) L. Fan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Rare Bacterial Biosphere

(2011) Carlos Pedrós-Alió   Annual Review of Marine Science

Multiple Approaches To Enhance the Cultivability of Bacteria Associated with the Marine SpongeHaliclona(gellius) sp.

(2011) Detmer Sipkema et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Highlights of marine invertebrate-derived biosynthetic products: Their biomedical potential and possible production by microbial associants

(2011) Ocky K. Radjasa et al.   BIOORGANIC & MEDICINAL CHEMISTRY

Sponge-specific clusters revisited: a comprehensive phylogeny of sponge-associated microorganisms

(2011) Rachel L. Simister et al.   ENVIRONMENTAL MICROBIOLOGY

Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species

(2011) O.-S. Kim et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges

(2011) Susanne Schmitt et al.   ISME Journal

Meeting Report: 1st International Symposium on Sponge Microbiology

(2011) Michael W. Taylor et al.   MARINE BIOTECHNOLOGY

Examination of Marine-Based Cultivation of Three Demosponges for Acquiring Bioactive Marine Natural Products

(2011) Oded Bergman et al.   Marine Drugs

Phylogenetic Diversity, Host-Specificity and Community Profiling of Sponge-Associated Bacteria in the Northern Gulf of Mexico

(2011) Patrick M. Erwin et al.   PLoS One

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

The pharmaceutical value of marine biodiversity for anti-cancer drug discovery

(2010) Patrick M. Erwin et al.   ECOLOGICAL ECONOMICS

Comparison of the anaerobic microbiota of deep-water Geodia spp. and sandy sediments in the Straits of Florida

(2010) Wolfram M Brück et al.   ISME Journal

Functional genomic analysis of an uncultured δ-proteobacterium in the sponge Cymbastela concentrica

(2010) Michael Yizhe Liu et al.   ISME Journal

Single-cell genomics reveals the lifestyle of Poribacteria, a candidate phylum symbiotically associated with marine sponges

(2010) Alexander Siegl et al.   ISME Journal

Isolation, Phylogenetic Analysis and Anti-infective Activity Screening of Marine Sponge-Associated Actinomycetes

(2010) Usama Ramadan Abdelmohsen et al.   Marine Drugs

Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses

(2010) Pablo Yarza et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

(2009) Victor Kunin et al.   ENVIRONMENTAL MICROBIOLOGY

An in situ method for cultivating microorganisms using a double encapsulation technique

(2009) Eitan Ben-Dov et al.   FEMS MICROBIOLOGY ECOLOGY

Culturable heterotrophic bacteria from the marine sponge Dendrilla nigra: isolation and phylogenetic diversity of actinobacteria

(2009) Joseph Selvin et al.   HELGOLAND MARINE RESEARCH

Notes on the characterization of prokaryote strains for taxonomic purposes

(2009) B. J. Tindall et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Marine Antimalarials

(2009) Ernesto Fattorusso et al.   Marine Drugs

Antibiotics as signals that trigger specific bacterial responses

(2008) Alicia Fajardo et al.   CURRENT OPINION IN MICROBIOLOGY

It's all relative: ranking the diversity of aquatic bacterial communities

(2008) Allison K. Shaw et al.   ENVIRONMENTAL MICROBIOLOGY

Oxygen dynamics and transport in the Mediterranean sponge Aplysina aerophoba

(2008) Friederike Hoffmann et al.   MARINE BIOLOGY

Metabolites from symbiotic bacteria

(2008) Jörn Piel   NATURAL PRODUCT REPORTS

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH

Biosynthetic origin of natural products isolated from marine microorganism-invertebrate assemblages

(2008) T. L. Simmons et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA