Exploring mixed microbial community functioning: recent advances in metaproteomics

An iterative workflow for mining the human intestinal metaproteome

(2011) Koos Rooijers et al.   BMC GENOMICS

Exploring the oral microbiota of children at various developmental stages of their dentition in the relation to their oral health

(2011) Wim Crielaard et al.   BMC Medical Genomics

Microorganisms and their roles in fundamental biogeochemical cycles

(2011) Eugene L Madsen   CURRENT OPINION IN BIOTECHNOLOGY

Proteome changes in the initial bacterial colonist during ecological succession in an acid mine drainage biofilm community

(2011) Ryan S. Mueller et al.   ENVIRONMENTAL MICROBIOLOGY

Assimilation of benzene carbon through multiple trophic levels traced by different stable isotope probing methodologies

(2011) Felipe Bastida et al.   FEMS MICROBIOLOGY ECOLOGY

A metaproteomic approach gives functional insights into anaerobic digestion

(2011) F. Abram et al.   JOURNAL OF APPLIED MICROBIOLOGY

Characterization of the Active Bacterial Community Involved in Natural Attenuation Processes in Arsenic-Rich Creek Sediments

(2011) Odile Bruneel et al.   MICROBIAL ECOLOGY

Quantitative Tracking of Isotope Flows in Proteomes of Microbial Communities

(2011) Chongle Pan et al.   MOLECULAR & CELLULAR PROTEOMICS

Metagenomic Analysis of Apple Orchard Soil Reveals Antibiotic Resistance Genes Encoding Predicted Bifunctional Proteins

(2010) J. J. Donato et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Systems approaches to microbial communities and their functioning

(2010) Wilfred FM Röling et al.   CURRENT OPINION IN BIOTECHNOLOGY

Comparative proteomics and activity of a green sulfur bacterium through the water column of Lake Cadagno, Switzerland

(2010) Kirsten S. Habicht et al.   ENVIRONMENTAL MICROBIOLOGY

Large-scale protein interactome mapping: strategies and opportunities

(2010) Sam Lievens et al.   Expert Review of Proteomics

Metaproteomic and metagenomic analyses of defined oceanic microbial populations using microwave cell fixation and flow cytometric sorting

(2010) Isabelle Mary et al.   FEMS MICROBIOLOGY ECOLOGY

Symbiont genomics, our new tangled bank

(2010) M. Medina et al.   GENOMICS

Proteome insights into the symbiotic relationship between a captive colony of Nasutitermes corniger and its hindgut microbiome

(2010) Kristin E Burnum et al.   ISME Journal

An integrative study of a meromictic lake ecosystem in Antarctica

(2010) Federico M Lauro et al.   ISME Journal

Metaproteogenomic analysis of a dominant green sulfur bacterium from Ace Lake, Antarctica

(2010) Charmaine Ng et al.   ISME Journal

Environmental proteomics of microbial plankton in a highly productive coastal upwelling system

(2010) Sarah M Sowell et al.   ISME Journal

Comparative metaproteomics reveals ocean-scale shifts in microbial nutrient utilization and energy transduction

(2010) Robert M Morris et al.   ISME Journal

Viral and microbial community dynamics in four aquatic environments

(2010) Beltran Rodriguez-Brito et al.   ISME Journal

Phylogenetic and proteomic analysis of an anaerobic toluene-degrading community

(2010) N. Jehmlich et al.   JOURNAL OF APPLIED MICROBIOLOGY

The Human Oral Microbiome

(2010) F. E. Dewhirst et al.   JOURNAL OF BACTERIOLOGY

Role of organic amendments on enhanced bioremediation of heavy metal(loid) contaminated soils

(2010) Jin Hee Park et al.   JOURNAL OF HAZARDOUS MATERIALS

Proteomic Analysis of a Noninvasive Human Model of Acute Inflammation and Its Resolution: The Twenty-one Day Gingivitis Model

(2010) Melissa M. Grant et al.   JOURNAL OF PROTEOME RESEARCH

Direct Cellular Lysis/Protein Extraction Protocol for Soil Metaproteomics

(2010) Karuna Chourey et al.   JOURNAL OF PROTEOME RESEARCH

Characterization of Metaproteomics in Crop Rhizospheric Soil

(2010) Hai-Bin Wang et al.   JOURNAL OF PROTEOME RESEARCH

Network-based function prediction and interactomics: The case for metabolic enzymes

(2010) S.C. Janga et al.   METABOLIC ENGINEERING

A metaproteomic analysis of the human salivary microbiota by three-dimensional peptide fractionation and tandem mass spectrometry

(2010) J.D. Rudney et al.   Molecular Oral Microbiology

Ecological distribution and population physiology defined by proteomics in a natural microbial community

(2010) Ryan S Mueller et al.   Molecular Systems Biology

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Tracing Changes in the Microbial Community of a Hydrocarbon-Polluted Soil by Culture-Dependent Proteomics

(2010) F. BASTIDA et al.   PEDOSPHERE

Proteogenomic basis for ecological divergence of closely related bacteria in natural acidophilic microbial communities

(2010) V. J. Denef et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Catalog of Reference Genomes from the Human Microbiome

(2010) et al.   SCIENCE

Metaproteomic characterization of a soil microbial community following carbon amendment

(2010) Mark A. Williams et al.   SOIL BIOLOGY & BIOCHEMISTRY

Metabolome-Proteome Differentiation Coupled to Microbial Divergence

(2010) P. Wilmes et al.   mBio

Isolation and Identification of Cellulose-Binding Proteins from Sheep Rumen Contents

(2009) A. Toyoda et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Improving protein extraction and separation methods for investigating the metaproteome of anaerobic benzene communities within sediments

(2009) Dirk Benndorf et al.   BIODEGRADATION

Soil metaproteomics: a review of an emerging environmental science. Significance, methodology and perspectives

(2009) F. Bastida et al.   EUROPEAN JOURNAL OF SOIL SCIENCE

Cultivation and quantitative proteomic analyses of acidophilic microbial communities

(2009) Christopher P Belnap et al.   ISME Journal

Oral Health and Mortality Risk from Pneumonia in the Elderly

(2009) S. Awano et al.   JOURNAL OF DENTAL RESEARCH

Metagenomic study of the oral microbiota by Illumina high-throughput sequencing

(2009) Vladimir Lazarevic et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Environmental Proteomics: a Paradigm Shift in Characterizing Microbial Activities at the Molecular Level

(2009) M. Keller et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Functional analysis of natural microbial consortia using community proteomics

(2009) Nathan C. VerBerkmoes et al.   NATURE REVIEWS MICROBIOLOGY

TerraGenome: a consortium for the sequencing of a soil metagenome

(2009) Timothy M. Vogel et al.   NATURE REVIEWS MICROBIOLOGY

Improving soil protein extraction for metaproteome analysis and glomalin-related soil protein detection

(2009) Shaoning Chen et al.   PROTEOMICS

Proteomics-inferred genome typing (PIGT) demonstrates inter-population recombination as a strategy for environmental adaptation

(2008) Vincent J. Denef et al.   ENVIRONMENTAL MICROBIOLOGY

Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea

(2008) Sarah M Sowell et al.   ISME Journal

Protein-based stable isotope probing (Protein-SIP) reveals active species within anoxic mixed cultures

(2008) Nico Jehmlich et al.   ISME Journal

Functional metagenomics reveals diverse β-lactamases in a remote Alaskan soil

(2008) Heather K Allen et al.   ISME Journal

Community proteogenomics highlights microbial strain-variant protein expression within activated sludge performing enhanced biological phosphorus removal

(2008) Paul Wilmes et al.   ISME Journal

Shotgun metaproteomics of the human distal gut microbiota

(2008) Nathan C Verberkmoes et al.   ISME Journal

Molecular eco-systems biology: towards an understanding of community function

(2008) Jeroen Raes et al.   NATURE REVIEWS MICROBIOLOGY

Metaproteomics Provides Functional Insight into Activated Sludge Wastewater Treatment

(2008) Paul Wilmes et al.   PLoS One

Investigating the Fate of Activated Sludge Extracellular Proteins in Sludge Digestion Using Sodium Dodecyl Sulfate Polyacrylamide Gel Electrophoresis

(2008) Chul Park et al.   WATER ENVIRONMENT RESEARCH

Evaluation of the extracellular proteins in full-scale activated sludges

(2008) Chul Park et al.   WATER RESEARCH

Application of metaproteomic analysis for studying extracellular polymeric substances (EPS) in activated sludge flocs and their fate in sludge digestion

(2008) C. Park et al.   WATER SCIENCE AND TECHNOLOGY