Large-scale protein interactome mapping: strategies and opportunities

An Integrative -omics Approach to Identify Functional Sub-Networks in Human Colorectal Cancer

(2010) Rod K. Nibbe et al.   PLoS Computational Biology

Shifted Transversal Design smart-pooling for high coverage interactome mapping

(2009) X. Xin et al.   GENOME RESEARCH

A Network-Based Method for Predicting Disease-Causing Genes

(2009) Shaul Karni et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Analysis of Vaccinia Virus−Host Protein−Protein Interactions: Validations of Yeast Two-Hybrid Screenings

(2009) Leiliang Zhang et al.   JOURNAL OF PROTEOME RESEARCH

Array MAPPIT: High-Throughput Interactome Analysis in Mammalian Cells

(2009) Sam Lievens et al.   JOURNAL OF PROTEOME RESEARCH

A global view of protein expression in human cells, tissues, and organs

(2009) Fredrik Pontén et al.   Molecular Systems Biology

Application of an integrated physical and functional screening approach to identify inhibitors of the Wnt pathway

(2009) Bryan W Miller et al.   Molecular Systems Biology

Molecular networks as sensors and drivers of common human diseases

(2009) Eric E. Schadt   NATURE

Dynamic modularity in protein interaction networks predicts breast cancer outcome

(2009) Ian W Taylor et al.   NATURE BIOTECHNOLOGY

Recurated protein interaction datasets

(2009) Lukasz Salwinski et al.   NATURE METHODS

The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs

(2009) Alain Jacquier   NATURE REVIEWS GENETICS

The Negatome database: a reference set of non-interacting protein pairs

(2009) Pawel Smialowski et al.   NUCLEIC ACIDS RESEARCH

Interactive learning: Lessons from two hybrids over two decades

(2009) Stanley Fields   PROTEOMICS

Global Functional Atlas of Escherichia coli Encompassing Previously Uncharacterized Proteins

(2009) Pingzhao Hu et al.   PLOS BIOLOGY

Walking the Interactome for Prioritization of Candidate Disease Genes

(2008) Sebastian Köhler et al.   AMERICAN JOURNAL OF HUMAN GENETICS

A Protein Domain-Based Interactome Network for C. elegans Early Embryogenesis

(2008) Mike Boxem et al.   CELL

Small molecular weight protein–protein interaction antagonists—an insurmountable challenge?

(2008) Alexander Dömling   CURRENT OPINION IN CHEMICAL BIOLOGY

A Large Scale Analysis of Protein-Protein Interactions in the Nitrogen-fixing Bacterium Mesorhizobium loti

(2008) Y. Shimoda et al.   DNA RESEARCH

Extracting interactions between proteins from the literature

(2008) Deyu Zhou et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Discovery and Scoring of Protein Interaction Subnetworks Discriminative of Late Stage Human Colon Cancer

(2008) Rod K. Nibbe et al.   MOLECULAR & CELLULAR PROTEOMICS

A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas

(2008) Kartik M Mani et al.   Molecular Systems Biology

Network-based global inference of human disease genes

(2008) Xuebing Wu et al.   Molecular Systems Biology

Cost-effective strategies for completing the interactome

(2008) Ariel S Schwartz et al.   NATURE METHODS

Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network

(2008) Nicolas Simonis et al.   NATURE METHODS

Next-generation high-density self-assembling functional protein arrays

(2008) Niroshan Ramachandran et al.   NATURE METHODS

An empirical framework for binary interactome mapping

(2008) Kavitha Venkatesan et al.   NATURE METHODS

An experimentally derived confidence score for binary protein-protein interactions

(2008) Pascal Braun et al.   NATURE METHODS

Literature-curated protein interaction datasets

(2008) Michael E Cusick et al.   NATURE METHODS

Human Protein Reference Database--2009 update

(2008) T. S. Keshava Prasad et al.   NUCLEIC ACIDS RESEARCH

The Binary Protein Interactome of Treponema pallidum – The Syphilis Spirochete

(2008) Björn Titz et al.   PLoS One

High-Quality Binary Protein Interaction Map of the Yeast Interactome Network

(2008) H. Yu et al.   SCIENCE

An in Vivo Map of the Yeast Protein Interactome

(2008) K. Tarassov et al.   SCIENCE