isomiRex: Web-based identification of microRNAs, isomiR variations and differential expression using next-generation sequencing datasets

A highly expressed miR-101 isomiR is a functional silencing small RNA

(2013) Franc Llorens et al.   BMC GENOMICS

MicroRNA Transcriptomes Relate Intermuscular Adipose Tissue to Metabolic Risk

(2013) Jideng Ma et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Characterization of the uterine leiomyoma microRNAome by deep sequencing

(2012) Boryana Georgieva et al.   GENOMICS

Consistent isomiR expression patterns and 3′ addition events in miRNA gene clusters and families implicate functional and evolutionary relationships

(2012) Li Guo et al.   MOLECULAR BIOLOGY REPORTS

Deep annotation of mouse iso-miR and iso-moR variation

(2012) Hongjun Zhou et al.   NUCLEIC ACIDS RESEARCH

YM500: a small RNA sequencing (smRNA-seq) database for microRNA research

(2012) Wei-Chung Cheng et al.   NUCLEIC ACIDS RESEARCH

IsomiRs – the overlooked repertoire in the dynamic microRNAome

(2012) Corine T. Neilsen et al.   TRENDS IN GENETICS

A Survey of MicroRNA Length Variants Contributing to miRNome Complexity in Peach (Prunus Persica L.)

(2012) Moreno Colaiacovo et al.   Frontiers in Plant Science

MicroRNAs and their isomiRs function cooperatively to target common biological pathways

(2011) Nicole Cloonan et al.   GENOME BIOLOGY

Dynamic isomiR regulation in Drosophila development

(2010) S. L. Fernandez-Valverde et al.   RNA

Complexity of the microRNA repertoire revealed by next-generation sequencing

(2010) L. W. Lee et al.   RNA

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Genome-wide profiling of Populus small RNAs

(2009) Daniel Klevebring et al.   BMC GENOMICS

SeqBuster, a bioinformatic tool for the processing and analysis of small RNAs datasets, reveals ubiquitous miRNA modifications in human embryonic cells

(2009) Lorena Pantano et al.   NUCLEIC ACIDS RESEARCH

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Targeting of microRNAs for therapeutics

(2008) Jan Stenvang et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

In silico identification of conserved microRNAs in large number of diverse plant species

(2008) Ramanjulu Sunkar et al.   BMC PLANT BIOLOGY

Identification of novel and candidate miRNAs in rice by high throughput sequencing

(2008) Ramanjulu Sunkar et al.   BMC PLANT BIOLOGY

Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells

(2008) R. D. Morin et al.   GENOME RESEARCH