Methods for analyzing and quantifying protein–protein interaction

Improved Detection of Quantitative Differences Using a Combination of Spectral Counting and MS/MS Total Ion Current

(2013) Dana M. Freund et al.   JOURNAL OF PROTEOME RESEARCH

Native Protein Complexes in the Cytoplasm of Red Blood Cells

(2013) Valeria Pallotta et al.   JOURNAL OF PROTEOME RESEARCH

Surface plasmon resonance: a useful technique for cell biologists to characterize biomolecular interactions

(2013) Robert V. Stahelin   MOLECULAR BIOLOGY OF THE CELL

Mapping the functional yeast ABC transporter interactome

(2013) Jamie Snider et al.   Nature Chemical Biology

Surface plasmon resonance imaging in arrays coupled with mass spectrometry (SUPRA–MS): proof of concept of on-chip characterization of a potential breast cancer marker in human plasma

(2012) F. Remy-Martin et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

High-Throughput Analysis of Protein–Protein Interactions in Picoliter-Volume Droplets Using Fluorescence Polarization

(2012) Jae-Won Choi et al.   ANALYTICAL CHEMISTRY

FRET microscopy in the living cell: Different approaches, strengths and weaknesses

(2012) Sergi Padilla-Parra et al.   BIOESSAYS

Visualization of cofilin-actin and Ras-Raf interactions by bimolecular fluorescence complementation assays using a new pair of split Venus fragments

(2012) Kazumasa Ohashi et al.   BIOTECHNIQUES

Bimolecular fluorescence complementation (BiFC): A 5-year update and future perspectives

(2012) Yutaka Kodama et al.   BIOTECHNIQUES

Chip-based protein-protein interaction studied by atomic force microscopy

(2012) Feng-Sheng Kao et al.   BIOTECHNOLOGY AND BIOENGINEERING

Cell-free protein synthesis: the state of the art

(2012) James W. Whittaker   BIOTECHNOLOGY LETTERS

Interactions of pro-apoptotic BH3 proteins with anti-apoptotic Bcl-2 family proteins measured in live MCF-7 cells using FLIM FRET

(2012) Qian Liu et al.   CELL CYCLE

X-ray crystallography and NMR studies of domain-swapped canecystatin-1

(2012) Napoleão F. Valadares et al.   FEBS Journal

Enzyme Kinetics and Interaction Studies for Human JNK1β1 and Substrates Activating Transcription Factor 2 (ATF2) and c-Jun N-terminal kinase (c-Jun)

(2012) Mariana Figuera-Losada et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Application of Bio-Layer Interferometry for the analysis of protein/liposome interactions

(2012) Jakob Wallner et al.   JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS

A comparison and optimization of yeast two-hybrid systems

(2012) J.H. Caufield et al.   METHODS

Protein microarrays, biosensors, and cell-based methods for secretome-wide extracellular protein–protein interaction mapping

(2012) Lino C. Gonzalez   METHODS

Microscale thermophoresis quantifies biomolecular interactions under previously challenging conditions

(2012) Susanne A.I. Seidel et al.   METHODS

Parallel Reaction Monitoring for High Resolution and High Mass Accuracy Quantitative, Targeted Proteomics

(2012) Amelia C. Peterson et al.   MOLECULAR & CELLULAR PROTEOMICS

Selected reaction monitoring–based proteomics: workflows, potential, pitfalls and future directions

(2012) Paola Picotti et al.   NATURE METHODS

How Many Protein-Protein Interactions Types Exist in Nature?

(2012) Leonardo Garma et al.   PLoS One

Affinity-based microarrays for proteomic analysis of cancer tissues

(2012) Jörg D. Hoheisel et al.   Proteomics Clinical Applications

Molecular Interaction Studies Using Microscale Thermophoresis

(2011) Moran Jerabek-Willemsen et al.   ASSAY AND DRUG DEVELOPMENT TECHNOLOGIES

Visualizing protein partnerships in living cells and organisms

(2011) Melissa A Lowder et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Split-protein systems: beyond binary protein–protein interactions

(2011) Sujan S Shekhawat et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Protein Interactions of Phosphatase and Tensin Homologue (PTEN) and Its Cancer-associated G20E Mutant Compared by Using Stable Isotope Labeling by Amino Acids in Cell Culture-based Parallel Affinity Purification

(2011) Jayantha Gunaratne et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Biosensor-based small molecule fragment screening with biolayer interferometry

(2011) Charles A. Wartchow et al.   JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN

Applications of isothermal titration calorimetry in pure and applied research-survey of the literature from 2010

(2011) Rajesh Ghai et al.   JOURNAL OF MOLECULAR RECOGNITION

Single-Molecule Detection on a Protein-Array Assay Platform for the Exposure of a Tuberculosis Antigen

(2011) Ronny Schmidt et al.   JOURNAL OF PROTEOME RESEARCH

Quantification of Protein−Protein Interactions with Chemical Cross-Linking and Mass Spectrometry

(2011) Juan D. Chavez et al.   JOURNAL OF PROTEOME RESEARCH

A Homogeneous Fluorescence Resonance Energy Transfer System for Monitoring the Activation of a Protein Switch in Real Time

(2011) Anke Bill et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Label-Free Proteomic Identification of Endogenous, Insulin-Stimulated Interaction Partners of Insulin Receptor Substrate-1

(2011) Thangiah Geetha et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Extending the Dynamic Range of Label-free Mass Spectrometric Quantification of Affinity Purifications

(2011) Wolfgang Bildl et al.   MOLECULAR & CELLULAR PROTEOMICS

Quantification of protein interactions and solution transport using high-density GMR sensor arrays

(2011) Richard S. Gaster et al.   Nature Nanotechnology

High Abundance Proteins Depletion vs Low Abundance Proteins Enrichment: Comparison of Methods to Reduce the Plasma Proteome Complexity

(2011) Renato Millioni et al.   PLoS One

C-Terminal Substitution of MDM2 Interacting Peptides Modulates Binding Affinity by Distinctive Mechanisms

(2011) Christopher J. Brown et al.   PLoS One

Development of FRET Assay into Quantitative and High-throughput Screening Technology Platforms for Protein–Protein Interactions

(2010) Yang Song et al.   ANNALS OF BIOMEDICAL ENGINEERING

Thermodynamic Characterization of the Binding Interaction between the Histone Demethylase LSD1/KDM1 and CoREST

(2010) Sunhee Hwang et al.   BIOCHEMISTRY

A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics

(2010) B.-J. M. Webb-Robertson et al.   BIOINFORMATICS

Recent advances in charting protein–protein interaction: mass spectrometry-based approaches

(2010) Anne-Claude Gavin et al.   CURRENT OPINION IN BIOTECHNOLOGY

Connections between Alternative Transcription and Alternative Splicing in Mammals

(2010) Svetlana A. Shabalina et al.   Genome Biology and Evolution

Extracting gene function from protein–protein interactions using Quantitative BAC InteraCtomics (QUBIC)

(2010) Nina C. Hubner et al.   METHODS

A new cross-linking strategy: protein interaction reporter (PIR) technology for protein–protein interaction studies

(2010) Xiaoting Tang et al.   Molecular BioSystems

A human MAP kinase interactome

(2010) Sourav Bandyopadhyay et al.   NATURE METHODS

Quantifying protein–protein interactions in high throughput using protein domain microarrays

(2010) Alexis Kaushansky et al.   Nature Protocols

Synonymous but not the same: the causes and consequences of codon bias

(2010) Joshua B. Plotkin et al.   NATURE REVIEWS GENETICS

Protein Microarrays: Novel Developments and Applications

(2010) Luis Berrade et al.   PHARMACEUTICAL RESEARCH

Protein-binding assays in biological liquids using microscale thermophoresis

(2010) Christoph J. Wienken et al.   Nature Communications

A human functional protein interaction network and its application to cancer data analysis

(2010) Guanming Wu et al.   GENOME BIOLOGY

Free-Solution Label-Free Detection of α-Crystallin Chaperone Interactions by Back-Scattering Interferometry

(2009) Joey C. Latham et al.   ANALYTICAL CHEMISTRY

Proteomics by Mass Spectrometry: Approaches, Advances, and Applications

(2009) John R. Yates et al.   Annual Review of Biomedical Engineering

Yeast Two-Hybrid, a Powerful Tool for Systems Biology

(2009) Anna Brückner et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Label-free detection techniques for protein microarrays: Prospects, merits and challenges

(2009) Sandipan Ray et al.   PROTEOMICS

Domain Stabilities in Protein Kinase R (PKR): Evidence for Weak Interdomain Interactions†

(2008) Eric Anderson et al.   BIOCHEMISTRY

Construction of a cancer-perturbed protein-protein interaction network for discovery of apoptosis drug targets

(2008) Liang-Hui Chu et al.   BMC Systems Biology

SILAC Mouse for Quantitative Proteomics Uncovers Kindlin-3 as an Essential Factor for Red Blood Cell Function

(2008) Marcus Krüger et al.   CELL

Next-generation high-density self-assembling functional protein arrays

(2008) Niroshan Ramachandran et al.   NATURE METHODS

Printing protein arrays from DNA arrays

(2008) Mingyue He et al.   NATURE METHODS

An empirical framework for binary interactome mapping

(2008) Kavitha Venkatesan et al.   NATURE METHODS

Quantitative proteomics using stable isotope labeling with amino acids in cell culture

(2008) H C Harsha et al.   Nature Protocols

BIOCHEMISTRY: How Do Proteins Interact?

(2008) D. D. Boehr et al.   SCIENCE

A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome

(2008) M. Sultan et al.   SCIENCE