The advancement of chemical cross-linking and mass spectrometry for structural proteomics: from single proteins to protein interaction networks

Developing New Isotope-Coded Mass Spectrometry-Cleavable Cross-Linkers for Elucidating Protein Structures

(2014) Clinton Yu et al.   ANALYTICAL CHEMISTRY

Dynamic protein ligand interactions - insights from MS

(2014) Carla Schmidt et al.   FEBS Journal

Pyruvate Formate-Lyase Interacts Directly with the Formate Channel FocA to Regulate Formate Translocation

(2014) Claudia Doberenz et al.   JOURNAL OF MOLECULAR BIOLOGY

A gas phase cleavage reaction of cross-linked peptides for protein complex topology studies by peptide fragment fingerprinting from large sequence database

(2014) Hansuk Buncherd et al.   Journal of Proteomics

Reliable Identification of Cross-Linked Products in Protein Interaction Studies by 13C-Labeled p-Benzoylphenylalanine

(2014) Jens Pettelkau et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

An In Vivo Photo-Cross-Linking Approach Reveals a Homodimerization Domain of Aha1 in S. cerevisiae

(2014) Michael Berg et al.   PLoS One

MS-based cross-linking analysis reveals the location of the PsbQ protein in cyanobacterial photosystem II

(2014) H. Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analysis of Amyloid Nanostructures Using Photo-cross-linking: In Situ Comparison of Three Widely Used Photo-cross-linkers

(2013) George W. Preston et al.   ACS Chemical Biology

Mass Spectrometry Methods for Studying Structure and Dynamics of Biological Macromolecules

(2013) Lars Konermann et al.   ANALYTICAL CHEMISTRY

Mass spectrometry supported determination of protein complex structure

(2013) Thomas Walzthoeni et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Monitoring Conformational Changes in Peroxisome Proliferator-Activated Receptor α by a Genetically Encoded Photoamino Acid, Cross-Linking, and Mass Spectrometry

(2013) Rico Schwarz et al.   JOURNAL OF MEDICINAL CHEMISTRY

In Vivo Protein Interaction Network Identified with a Novel Real-Time Cross-Linked Peptide Identification Strategy

(2013) Chad R. Weisbrod et al.   JOURNAL OF PROTEOME RESEARCH

Quantitative cross-linking/mass spectrometry using isotope-labelled cross-linkers

(2013) Lutz Fischer et al.   Journal of Proteomics

Protein Interactions, Post-translational Modifications and Topologies in Human Cells

(2013) Juan D. Chavez et al.   MOLECULAR & CELLULAR PROTEOMICS

Architecture of the large subunit of the mammalian mitochondrial ribosome

(2013) Basil J. Greber et al.   NATURE

Lysine-specific chemical cross-linking of protein complexes and identification of cross-linking sites using LC-MS/MS and the xQuest/xProphet software pipeline

(2013) Alexander Leitner et al.   Nature Protocols

Cross-Link Guided Molecular Modeling with ROSETTA

(2013) Abdullah Kahraman et al.   PLoS One

Phycobilisomes Supply Excitations to Both Photosystems in a Megacomplex in Cyanobacteria

(2013) H. Liu et al.   SCIENCE

Comparative cross-linking and mass spectrometry of an intact F-type ATPase suggest a role for phosphorylation

(2013) Carla Schmidt et al.   Nature Communications

Analysis of Peptide Secondary Structures by Photoactivatable Amino Acid Analogues

(2012) Knut Kölbel et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Mass Spectrometry-Based Structural Proteomics

(2012) Jason J. Serpa et al.   EUROPEAN JOURNAL OF MASS SPECTROMETRY

Expanding the Chemical Cross-Linking Toolbox by the Use of Multiple Proteases and Enrichment by Size Exclusion Chromatography

(2012) Alexander Leitner et al.   MOLECULAR & CELLULAR PROTEOMICS

Evaluating protein interactions through cross-linking mass spectrometry

(2012) David L Tabb   NATURE METHODS

Subunit order of eukaryotic TRiC/CCT chaperonin by cross-linking, mass spectrometry, and combinatorial homology modeling

(2012) N. Kalisman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

In vivo protein complex topologies: Sights through a cross-linking lens

(2012) James E. Bruce   PROTEOMICS

Chemical cross-linkers for protein structure studies by mass spectrometry

(2012) David Paramelle et al.   PROTEOMICS

Optimizing the enrichment of cross-linked products for mass spectrometric protein analysis

(2012) Romy Fritzsche et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Structural Probing of a Protein Phosphatase 2A Network by Chemical Cross-Linking and Mass Spectrometry

(2012) F. Herzog et al.   SCIENCE

The Molecular Architecture of the Eukaryotic Chaperonin TRiC/CCT

(2012) Alexander Leitner et al.   STRUCTURE

Bioinformatics tools for the structural elucidation of multi-subunit protein complexes by mass spectrometric analysis of protein-protein cross-links

(2011) S. L. N. Mayne et al.   BRIEFINGS IN BIOINFORMATICS

CrossWork: Software-assisted identification of cross-linked peptides

(2011) Morten I. Rasmussen et al.   Journal of Proteomics

StavroX—A Software for Analyzing Crosslinked Products in Protein Interaction Studies

(2011) Michael Götze et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Probing the Conformation of the ISWI ATPase Domain With Genetically Encoded Photoreactive Crosslinkers and Mass Spectrometry

(2011) Ignasi Forné et al.   MOLECULAR & CELLULAR PROTEOMICS

Cleavable Cross-Linker for Protein Structure Analysis: Reliable Identification of Cross-Linking Products by Tandem MS

(2010) Mathias Q. Müller et al.   ANALYTICAL CHEMISTRY

Architecture of the RNA polymerase II–TFIIF complex revealed by cross-linking and mass spectrometry

(2010) Zhuo Angel Chen et al.   EMBO JOURNAL

Database Search Algorithm for Identification of Intact Cross-Links in Proteins and Peptides Using Tandem Mass Spectrometry

(2010) Hua Xu et al.   JOURNAL OF PROTEOME RESEARCH

xComb: A Cross-Linked Peptide Database Approach to Protein−Protein Interaction Analysis

(2010) Alexandre Panchaud et al.   JOURNAL OF PROTEOME RESEARCH

The beginning of a beautiful friendship: Cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes

(2010) Juri Rappsilber   JOURNAL OF STRUCTURAL BIOLOGY

An Isotopically Coded CID-cleavable Biotinylated Cross-linker for Structural Proteomics

(2010) Evgeniy V. Petrotchenko et al.   MOLECULAR & CELLULAR PROTEOMICS

A new cross-linking strategy: protein interaction reporter (PIR) technology for protein–protein interaction studies

(2010) Xiaoting Tang et al.   Molecular BioSystems

Computational modeling of laminin N-terminal domains using sparse distance constraints from disulfide bonds and chemical cross-linking

(2010) Stefan Kalkhof et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Structural Insights into the Calmodulin−Munc13 Interaction Obtained by Cross-Linking and Mass Spectrometry

(2009) Kalina Dimova et al.   BIOCHEMISTRY

Chemical cross-linking with NHS esters: a systematic study on amino acid reactivities

(2009) Stefanie Mädler et al.   JOURNAL OF MASS SPECTROMETRY

Chances and pitfalls of chemical cross-linking with amine-reactive N-hydroxysuccinimide esters

(2008) Stefan Kalkhof et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Ionic Reagent for Controlling the Gas-Phase Fragmentation Reactions of Cross-Linked Peptides

(2008) Yali Lu et al.   ANALYTICAL CHEMISTRY

De Novo High-Resolution Protein Structure Determination from Sparse Spin-Labeling EPR Data

(2008) Nathan Alexander et al.   STRUCTURE

Quantitative evaluation of the lengths of homobifunctional protein cross-linking reagents used as molecular rulers

(2002) Nora S. Green et al.   PROTEIN SCIENCE