Bioinformatics tools for the structural elucidation of multi-subunit protein complexes by mass spectrometric analysis of protein-protein cross-links

Investigation of protein–protein interactions in living cells by chemical crosslinking and mass spectrometry

(2010) Andrea Sinz   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Stoichiometry and Topology of the Complex of the Endogenous ATP Synthase Inhibitor Protein IF1with Calmodulin

(2010) Daniela Pagnozzi et al.   BIOCHEMISTRY

Harvest: an open-source tool for the validation and improvement of peptide identification metrics and fragmentation exploration

(2010) Leo C McHugh et al.   BMC BIOINFORMATICS

Architecture of the RNA polymerase II–TFIIF complex revealed by cross-linking and mass spectrometry

(2010) Zhuo Angel Chen et al.   EMBO JOURNAL

Detecting Cross-Linked Peptides by Searching against a Database of Cross-Linked Peptide Pairs

(2010) Sean McIlwain et al.   JOURNAL OF PROTEOME RESEARCH

Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data

(2009) Navdeep Jaitly et al.   BMC BIOINFORMATICS

Protein structure determination by electron cryo-microscopy

(2009) Slavica Jonic et al.   CURRENT OPINION IN PHARMACOLOGY

Finding Chimeras: a Bioinformatics Strategy for Identification of Cross-linked Peptides

(2009) Feixia Chu et al.   MOLECULAR & CELLULAR PROTEOMICS

Interface Analysis of the Complex between ERK2 and PTP-SL

(2009) Mihaela C. Balasu et al.   PLoS One

Synthesis of biotin-tagged chemical cross-linkers and their applications for mass spectrometry

(2009) Sebyung Kang et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Characterization of Protein Cross-Links via Mass Spectrometry and an Open-Modification Search Strategy

(2008) Pragya Singh et al.   ANALYTICAL CHEMISTRY

MSX-3D: a tool to validate 3D protein models using mass spectrometry

(2008) M. Heymann et al.   BIOINFORMATICS

A Three-dimensional Homology Model of Lipid-free Apolipoprotein A-IV Using Cross-linking and Mass Spectrometry

(2008) Matthew R. Tubb et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

CrossSearch, a User-friendly Search Engine for Detecting Chemically Cross-linked Peptides in Conjugated Proteins

(2008) Owen W. Nadeau et al.   MOLECULAR & CELLULAR PROTEOMICS

Identification of Protein-Protein Interactions and Topologies in Living Cells with Chemical Cross-linking and Mass Spectrometry

(2008) Haizhen Zhang et al.   MOLECULAR & CELLULAR PROTEOMICS

Precision proteomics: The case for high resolution and high mass accuracy

(2008) M. Mann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epitope mapping on bovine prion protein using chemical cross-linking and mass spectrometry

(2007) Tatiana Pimenova et al.   JOURNAL OF MASS SPECTROMETRY

Identification and Characterization of Disulfide Bonds in Proteins and Peptides from Tandem MS Data by Use of the MassMatrix MS/MS Search Engine

(2007) Hua Xu et al.   JOURNAL OF PROTEOME RESEARCH