Recent advances in biomarker discovery in solid organ transplant by proteomics

Content-based microarray search using differential expression profiles

(2011) Jesse M Engreitz et al.   BMC BIOINFORMATICS

Comparative Proteomic Analysis of Lung Tissue from Patients with Idiopathic Pulmonary Fibrosis (IPF) and Lung Transplant Donor Lungs

(2011) Martina Korfei et al.   JOURNAL OF PROTEOME RESEARCH

Charting a course for genomic medicine from base pairs to bedside

(2011) Eric D. Green et al.   NATURE

The value of data

(2011) Barend Mons et al.   NATURE GENETICS

Diagnosis of subclinical and clinical acute T-cell-mediated rejection in renal transplant patients by urinary proteome analysis

(2011) Jochen Metzger et al.   Proteomics Clinical Applications

Personalized Medicine and Prediction of Outcome in Kidney Transplant

(2010) Alexander S. Goldfarb-Rumyantzev   AMERICAN JOURNAL OF KIDNEY DISEASES

Biomarkers of immunoregulatory status in stable liver transplant recipients undergoing weaning of immunosuppressive therapy

(2010) Olga Millán et al.   CLINICAL IMMUNOLOGY

Optimizing protein recovery for urinary proteomics, a tool to monitor renal transplantation

(2010) Tara K. Sigdel et al.   CLINICAL TRANSPLANTATION

Integrative Urinary Peptidomics in Renal Transplantation Identifies Biomarkers for Acute Rejection

(2010) X. B. Ling et al.   JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY

Molecular Mechanisms of Chronic Kidney Transplant Rejection via Large-Scale Proteogenomic Analysis of Tissue Biopsies

(2010) A. Nakorchevsky et al.   JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY

Rejection and function and chronic allograft dysfunction

(2010) Johan W. de Fijter   KIDNEY INTERNATIONAL

Urine neutrophil gelatinase-associated lipocalin is a marker of graft recovery after kidney transplantation

(2010) Maria E. Hollmen et al.   KIDNEY INTERNATIONAL

Proteomic Signatures in Plasma during Early Acute Renal Allograft Rejection

(2010) Gabriela V. Cohen Freue et al.   MOLECULAR & CELLULAR PROTEOMICS

Rejection of the Kidney Allograft

(2010) Brian J. Nankivell et al.   NEW ENGLAND JOURNAL OF MEDICINE

Proteomics Reveals Novel Oxidative and Glycolytic Mechanisms in Type 1 Diabetic Patients' Skin Which Are Normalized by Kidney-Pancreas Transplantation

(2010) Franco Folli et al.   PLoS One

Shotgun proteomics identifies proteins specific for acute renal transplant rejection

(2010) Tara K. Sigdel et al.   Proteomics Clinical Applications

Comprehensive human urine standards for comparability and standardization in clinical proteome analysis

(2010) Harald Mischak et al.   Proteomics Clinical Applications

Toward Personalized Medicine in Renal Transplantation

(2010) I. Lampreabe et al.   TRANSPLANTATION PROCEEDINGS

Differentially Expressed RNA from Public Microarray Data Identifies Serum Protein Biomarkers for Cross-Organ Transplant Rejection and Other Conditions

(2010) Rong Chen et al.   PLoS Computational Biology

Urinary CXCL9 and CXCL10 Levels Correlate with the Extent of Subclinical Tubulitis

(2009) S. Schaub et al.   AMERICAN JOURNAL OF TRANSPLANTATION

Registry of the International Society for Heart and Lung Transplantation: Twenty-sixth Official Adult Heart Transplant Report—2009

(2009) David O. Taylor et al.   JOURNAL OF HEART AND LUNG TRANSPLANTATION

First Insight into the Human Liver Proteome from PROTEOMESKY-LIVERHu1.0, a Publicly Available Database

(2009)   JOURNAL OF PROTEOME RESEARCH

Direct RNA sequencing

(2009) Fatih Ozsolak et al.   NATURE

Proteomic analysis of urine from proteinuric patients shows a proteolitic activity directed against albumin

(2009) Riccardo Magistroni et al.   NEPHROLOGY DIALYSIS TRANSPLANTATION

Biomarkers for Early and Late Stage Chronic Allograft Nephropathy by Proteogenomic Profiling of Peripheral Blood

(2009) Sunil M. Kurian et al.   PLoS One

Identifying compartment-specific non-HLA targets after renal transplantation by integrating transcriptome and "antibodyome" measures

(2009) L. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proteomic Analysis of HCV Cirrhosis and HCV-Induced HCC: Identifying Biomarkers for Monitoring HCV-Cirrhotic Patients Awaiting Liver Transplantation

(2009) Valeria R. Mas et al.   TRANSPLANTATION

Proteomic Profiling of Acute Cardiac Allograft Rejection

(2009) Katrin Kienzl et al.   TRANSPLANTATION

Pharmacogenetics of Calcineurin Inhibitors in Renal Transplantation

(2009) Eliecer Coto et al.   TRANSPLANTATION

Urinary Peptidomic Analysis Identifies Potential Biomarkers for Acute Rejection of Renal Transplantation

(2009) Tara K. Sigdel et al.   Clinical Proteomics

Individualization of immunosuppression: concepts and rationale

(2008) Moses D Wavamunno et al.   Current Opinion in Organ Transplantation

Relationship Between Natriuretic Peptides and Inflammation: Proteomic Evidence Obtained During Acute Cellular Cardiac Allograft Rejection in Humans

(2008) Yael F. Meirovich et al.   JOURNAL OF HEART AND LUNG TRANSPLANTATION

Urine Proteomics to Detect Biomarkers for Chronic Allograft Dysfunction

(2008) L. F. Quintana et al.   JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY

High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi

(2008) Kathryn E Holt et al.   NATURE GENETICS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

The proteogenomic path towards biomarker discovery

(2008) Tara K. Sigdel et al.   PEDIATRIC TRANSPLANTATION

MEDICINE: The Ultimate Model Organism

(2008) A. J. Butte   SCIENCE