Retrospective validation of whole genome sequencing-enhanced surveillance of listeriosis in Europe, 2010 to 2015

PulseNet International: Vision for the implementation of whole genome sequencing (WGS) for global food-borne disease surveillance

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Clinical features and prognostic factors of listeriosis: the MONALISA national prospective cohort study

(2017) Caroline Charlier et al.   LANCET INFECTIOUS DISEASES

Implementation of Nationwide Real-time Whole-genome Sequencing to Enhance Listeriosis Outbreak Detection and Investigation

(2016) Brendan R. Jackson et al.   CLINICAL INFECTIOUS DISEASES

Two listeria outbreaks caused by smoked fish consumption—using whole-genome sequencing for outbreak investigations

(2016) S. Gillesberg Lassen et al.   CLINICAL MICROBIOLOGY AND INFECTION

Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity

(2016) Mylène M Maury et al.   NATURE GENETICS

Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes

(2016) Alexandra Moura et al.   Nature Microbiology

Whole-Genome Sequencing Allows for Improved Identification of Persistent Listeria monocytogenes in Food-Associated Environments

(2015) Matthew J. Stasiewicz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Defining and Evaluating a Core Genome Multilocus Sequence Typing Scheme for Whole-Genome Sequence-Based Typing of Listeria monocytogenes

(2015) Werner Ruppitsch et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Whole genome sequencing as a tool to investigate a cluster of seven cases of listeriosis in Austria and Germany, 2011–2013

(2014) D. Schmid et al.   CLINICAL MICROBIOLOGY AND INFECTION

Strengthening the Reporting of Molecular Epidemiology for Infectious Diseases (STROME-ID): an extension of the STROBE statement

(2014) Nigel Field et al.   LANCET INFECTIOUS DISEASES

The global burden of listeriosis: a systematic review and meta-analysis

(2014) Charline Maertens de Noordhout et al.   LANCET INFECTIOUS DISEASES

Genome Sequencing Identifies Two Nearly Unchanged Strains of Persistent Listeria monocytogenes Isolated at Two Different Fish Processing Plants Sampled 6 Years Apart

(2013) Anne Holch et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

What is the incubation period for listeriosis?

(2013) Véronique Goulet et al.   BMC INFECTIOUS DISEASES

MLST revisited: the gene-by-gene approach to bacterial genomics

(2013) Martin C. J. Maiden et al.   NATURE REVIEWS MICROBIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Listeriosis in human pregnancy: a systematic review

(2011) Ronald F. Lamont et al.   JOURNAL OF PERINATAL MEDICINE

Prospective Genomic Characterization of the German Enterohemorrhagic Escherichia coli O104:H4 Outbreak by Rapid Next Generation Sequencing Technology

(2011) Alexander Mellmann et al.   PLoS One

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Short-term genome evolution of Listeria monocytogenes in a non-controlled environment

(2009) Renato H Orsi et al.   BMC GENOMICS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH