Genome wide association mapping of agro-morphological and disease resistance traits in sugarcane

MCMC Methods for Multi-Response Generalized Linear Mixed Models: TheMCMCglmmRPackage

(2015) Jarrod D. Hadfield   Journal of Statistical Software

Development, cross-species/genera transferability of novel EST-SSR markers and their utility in revealing population structure and genetic diversity in sugarcane

(2013) Ram K. Singh et al.   GENE

Genome-Wide Association Analysis of Aluminum Tolerance in Cultivated and Tibetan Wild Barley

(2013) Shengguan Cai et al.   PLoS One

Experimental assessment of the accuracy of genomic selection in sugarcane

(2013) M. Gouy et al.   THEORETICAL AND APPLIED GENETICS

A major quantitative trait allele for resistance to theSugarcane yellow leaf virus(Luteoviridae)

(2012) Laurent Costet et al.   PLANT BREEDING

Haplotype structure around Bru1 reveals a narrow genetic basis for brown rust resistance in modern sugarcane cultivars

(2012) L. Costet et al.   THEORETICAL AND APPLIED GENETICS

Mapping QTL for agronomic traits in breeding populations

(2012) Tobias Würschum   THEORETICAL AND APPLIED GENETICS

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

The Relationship between Population Structure and Aluminum Tolerance in Cultivated Sorghum

(2011) Fernanda F. Caniato et al.   PLoS One

A mixed model QTL analysis for sugarcane multiple-harvest-location trial data

(2011) M. M. Pastina et al.   THEORETICAL AND APPLIED GENETICS

Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa

(2011) Keyan Zhao et al.   Nature Communications

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Control of Population Stratification by Correlation-Selected Principal Components

(2010) Seunggeun Lee et al.   BIOMETRICS

Simultaneously accounting for population structure, genotype by environment interaction, and spatial variation in marker–trait associations in sugarcaneThis article is one of a selection of papers from the conference “Exploiting Genome-wide Association in Oilseed Brassicas: a model for genetic improvement of major OECD crops for sustainable farming”.

(2010) Xianming Wei et al.   GENOME

Diversity Arrays Technology effectively reveals DNA polymorphism in a large and complex genome of sugarcane

(2010) Katarzyna Heller-Uszynska et al.   MOLECULAR BREEDING

Quantitative trait loci for sugarcane resistance to the spotted stem borer Chilo sacchariphagus

(2010) S. Nibouche et al.   MOLECULAR BREEDING

Identification of New Candidate Pathogenicity Factors in the Xylem-Invading PathogenXanthomonas albilineansby Transposon Mutagenesis

(2010) Philippe Rott et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

New approaches to population stratification in genome-wide association studies

(2010) Alkes L. Price et al.   NATURE REVIEWS GENETICS

Sugarcane for bioenergy production: an assessment of yield and regulation of sucrose content

(2010) Alessandro J. Waclawovsky et al.   PLANT BIOTECHNOLOGY JOURNAL

Population structure and linkage disequilibrium unravelled in tetraploid potato

(2010) Björn B. D’hoop et al.   THEORETICAL AND APPLIED GENETICS

Identification of molecular markers associated with sugar-related traits in a Saccharum interspecific cross

(2009) Sreedhar Alwala et al.   EUPHYTICA

The Brazilian experience of sugarcane ethanol industry

(2009) Sizuo Matsuoka et al.   IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-PLANT

Power of a genome scan to detect and locate quantitative trait loci in cattle using dense single nucleotide polymorphisms

(2009) I.M. MacLeod et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

A Genealogical Interpretation of Principal Components Analysis

(2009) Gil McVean   PLoS Genetics

A unified approach to false discovery rate estimation

(2008) Korbinian Strimmer   BMC BIOINFORMATICS

Analysis of genome-wide linkage disequilibrium in the highly polyploid sugarcane

(2008) Louis-Marie Raboin et al.   THEORETICAL AND APPLIED GENETICS

Genetic control of yield related stalk traits in sugarcane

(2008) K. S. Aitken et al.   THEORETICAL AND APPLIED GENETICS

Status and Prospects of Association Mapping in Plants

(2008) Chengsong Zhu et al.   Plant Genome