Dynamics and Innovations within Oomycete Genomes: Insights into Biology, Pathology, and Evolution
Published 2012 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Dynamics and Innovations within Oomycete Genomes: Insights into Biology, Pathology, and Evolution
Authors
Keywords
-
Journal
EUKARYOTIC CELL
Volume 11, Issue 11, Pages 1304-1312
Publisher
American Society for Microbiology
Online
2012-08-25
DOI
10.1128/ec.00155-12
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Oomycetes, effectors, and all that jazz
- (2012) Tolga O Bozkurt et al. CURRENT OPINION IN PLANT BIOLOGY
- Reconstruction of Oomycete Genome Evolution Identifies Differences in Evolutionary Trajectories Leading to Present-Day Large Gene Families
- (2012) Michael F. Seidl et al. Genome Biology and Evolution
- Natural antisense transcripts in fungi
- (2012) Michael E. Donaldson et al. MOLECULAR MICROBIOLOGY
- Genome Sequencing and Mapping Reveal Loss of Heterozygosity as a Mechanism for Rapid Adaptation in the Vegetable Pathogen Phytophthora capsici
- (2012) Kurt H. Lamour et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- The NLP Toxin Family in Phytophthora sojae Includes Rapidly Evolving Groups That Lack Necrosis-Inducing Activity
- (2012) Suomeng Dong et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Alternative Splicing of a Multi-Drug Transporter from Pseudoperonospora cubensis Generates an RXLR Effector Protein That Elicits a Rapid Cell Death
- (2012) Elizabeth A. Savory et al. PLoS One
- Phenotypic Diversification Is Associated with Host-Induced Transposon Derepression in the Sudden Oak Death Pathogen Phytophthora ramorum
- (2012) Takao Kasuga et al. PLoS One
- mRNA-Seq Analysis of the Pseudoperonospora cubensis Transcriptome During Cucumber (Cucumis sativus L.) Infection
- (2012) Elizabeth A. Savory et al. PLoS One
- Emergence of the sudden oak death pathogen Phytophthora ramorum
- (2012) Niklaus J. Grünwald et al. TRENDS IN MICROBIOLOGY
- Transcriptomic analysis of the interaction between Helianthus annuus and its obligate parasite Plasmopara halstedii shows single nucleotide polymorphisms in CRN sequences
- (2011) Falah As-sadi et al. BMC GENOMICS
- The aspartic proteinase family of three Phytophthora species
- (2011) John Kay et al. BMC GENOMICS
- Characterization of intronic structures and alternative splicing in Phytophthora sojae by comparative analysis of expressed sequence tags and genomic sequences
- (2011) Danyu Shen et al. CANADIAN JOURNAL OF MICROBIOLOGY
- How do oomycete effectors interfere with plant life?
- (2011) Joost HM Stassen et al. CURRENT OPINION IN PLANT BIOLOGY
- Transposable element origins of epigenetic gene regulation
- (2011) Damon Lisch et al. CURRENT OPINION IN PLANT BIOLOGY
- Silencing of the PiAvr3a effector-encoding gene from Phytophthora infestans by transcriptional fusion to a short interspersed element
- (2011) Ramesh R. Vetukuri et al. Fungal Biology
- The oomycete Pythium oligandrum expresses putative effectors during mycoparasitism of Phytophthora infestans and is amenable to transformation
- (2011) Neil R. Horner et al. Fungal Biology
- RNA-Seq reveals infection-related global gene changes in Phytophthora phaseoli, the causal agent of lima bean downy mildew
- (2011) SRIDHARA G. KUNJETI et al. MOLECULAR PLANT PATHOLOGY
- 454 Genome Sequencing ofPseudoperonospora cubensisReveals Effector Proteins with a QXLR Translocation Motif
- (2011) Miaoying Tian et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Presence/absence, differential expression and sequence polymorphisms between PiAVR2 and PiAVR2-like in Phytophthora infestans determine virulence on R2 plants
- (2011) Eleanor M. Gilroy et al. NEW PHYTOLOGIST
- The Genus Phytophthora Anno 2012
- (2011) Laurens P. N. M. Kroon et al. PHYTOPATHOLOGY
- A Molecular Insight into Algal-Oomycete Warfare: cDNA Analysis of Ectocarpus siliculosus Infected with the Basal Oomycete Eurychasma dicksonii
- (2011) Laura Grenville-Briggs et al. PLoS One
- Sequence Variants of the Phytophthora sojae RXLR Effector Avr3a/5 Are Differentially Recognized by Rps3a and Rps5 in Soybean
- (2011) Suomeng Dong et al. PLoS One
- Red and Green Algal Origin of Diatom Membrane Transporters: Insights into Environmental Adaptation and Cell Evolution
- (2011) Cheong Xin Chan et al. PLoS One
- Horizontal gene transfer facilitated the evolution of plant parasitic mechanisms in the oomycetes
- (2011) T. A. Richards et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The evolutionary phylogeny of the oomycete “fungi”
- (2011) Gordon W. Beakes et al. PROTOPLASMA
- Gene Gain and Loss during Evolution of Obligate Parasitism in the White Rust Pathogen of Arabidopsis thaliana
- (2011) Eric Kemen et al. PLOS BIOLOGY
- Crypton transposons: identification of new diverse families and ancient domestication events
- (2011) Kenji K Kojima et al. Mobile DNA
- The inclusion of downy mildews in a multi-locus-dataset and its reanalysis reveals a high degree of paraphyly in Phytophthora
- (2011) Fabian Runge et al. IMA Fungus
- The kinome of Phytophthora infestans reveals oomycete-specific innovations and links to other taxonomic groups
- (2010) Howard S Judelson et al. BMC GENOMICS
- Analyses of genome architecture and gene expression reveal novel candidate virulence factors in the secretome of Phytophthora infestans
- (2010) Sylvain Raffaele et al. BMC GENOMICS
- Myb transcription factors in the oomycete Phytophthora with novel diversified DNA-binding domains and developmental stage-specific expression
- (2010) Qijun Xiang et al. GENE
- Phylogenomic Evidence for Separate Acquisition of Plastids in Cryptophytes, Haptophytes, and Stramenopiles
- (2010) D. Baurain et al. MOLECULAR BIOLOGY AND EVOLUTION
- A Domain-Centric Analysis of Oomycete Plant Pathogen Genomes Reveals Unique Protein Organization
- (2010) M. F. Seidl et al. PLANT PHYSIOLOGY
- Ancient class of translocated oomycete effectors targets the host nucleus
- (2010) S. Schornack et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Signatures of Adaptation to Obligate Biotrophy in the Hyaloperonospora arabidopsidis Genome
- (2010) L. Baxter et al. SCIENCE
- Genome Evolution Following Host Jumps in the Irish Potato Famine Pathogen Lineage
- (2010) S. Raffaele et al. SCIENCE
- Broadly Sampled Multigene Analyses Yield a Well-Resolved Eukaryotic Tree of Life
- (2010) Laura Wegener Parfrey et al. SYSTEMATIC BIOLOGY
- Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire
- (2010) C André Lévesque et al. GENOME BIOLOGY
- Cyanobacterial contribution to the genomes of the plastid-lacking protists
- (2009) Shinichiro Maruyama et al. BMC EVOLUTIONARY BIOLOGY
- Are algal genes in nonphotosynthetic protists evidence of historical plastid endosymbioses?
- (2009) John W Stiller et al. BMC GENOMICS
- A motif within a complex promoter from the oomycete Phytophthora infestans determines transcription during an intermediate stage of sporulation
- (2009) Qijun Xiang et al. FUNGAL GENETICS AND BIOLOGY
- Co-Expression of Neighboring Genes in the Zebrafish (Danio rerio) Genome
- (2009) Huai-Kuang Tsai et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Chromalveolates and the Evolution of Plastids by Secondary Endosymbiosis
- (2009) PATRICK J. KEELING JOURNAL OF EUKARYOTIC MICROBIOLOGY
- Evolutionary Forces Act on Promoter Length: Identification of Enriched Cis-Regulatory Elements
- (2009) E. Kristiansson et al. MOLECULAR BIOLOGY AND EVOLUTION
- Metabolic adaptation ofPhytophthora infestansduring growth on leaves, tubers and artificial media
- (2009) HOWARD S. JUDELSON et al. MOLECULAR PLANT PATHOLOGY
- Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans
- (2009) Brian J. Haas et al. NATURE
- Sterol metabolism in the oomycete Aphanomyces euteiches, a legume root pathogen
- (2009) Mohammed-Amine Madoui et al. NEW PHYTOLOGIST
- Multiple Horizontal Gene Transfer Events and Domain Fusions Have Created Novel Regulatory and Metabolic Networks in the Oomycete Genome
- (2009) Paul Francis Morris et al. PLoS One
- Genomic Footprints of a Cryptic Plastid Endosymbiosis in Diatoms
- (2009) A. Moustafa et al. SCIENCE
- The transferome of metabolic genes explored: analysis of the horizontal transfer of enzyme encoding genes in unicellular eukaryotes
- (2009) John W Whitaker et al. GENOME BIOLOGY
- FTFD: an informatics pipeline supporting phylogenomic analysis of fungal transcription factors
- (2008) J. Park et al. BIOINFORMATICS
- Optimization of transgene-mediated silencing in Phytophthora infestans and its association with small-interfering RNAs
- (2008) Audrey M.V. Ah-Fong et al. FUNGAL GENETICS AND BIOLOGY
- Internuclear gene silencing in Phytophthora infestans is established through chromatin remodelling
- (2008) P. van West et al. MICROBIOLOGY-SGM
- Phytophthora infestans: the plant (and R gene) destroyer
- (2008) WILLIAM FRY MOLECULAR PLANT PATHOLOGY
- Gene Expression Profiling During Asexual Development of the Late Blight Pathogen Phytophthora infestans Reveals a Highly Dynamic Transcriptome
- (2008) Howard S. Judelson et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Structure of the Glucanase Inhibitor Protein (GIP) Family fromPhytophthoraSpecies Suggests Coevolution with Plant Endo-β-1,3-Glucanases
- (2008) Cynthia M. B. Damasceno et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- The Phaeodactylum genome reveals the evolutionary history of diatom genomes
- (2008) Chris Bowler et al. NATURE
- Transcriptome of Aphanomyces euteiches: New Oomycete Putative Pathogenicity Factors and Metabolic Pathways
- (2008) Elodie Gaulin et al. PLoS One
- Whole-genome analysis reveals molecular innovations and evolutionary transitions in chromalveolate species
- (2008) C. Martens et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started