Understanding the structural and dynamic consequences of DNA epigenetic modifications: Computational insights into cytosine methylation and hydroxymethylation
Published 2015 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Understanding the structural and dynamic consequences of DNA epigenetic modifications: Computational insights into cytosine methylation and hydroxymethylation
Authors
Keywords
-
Journal
Epigenetics
Volume 9, Issue 12, Pages 1604-1612
Publisher
Informa UK Limited
Online
2015-01-28
DOI
10.4161/15592294.2014.988043
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- A paternal environmental legacy: Evidence for epigenetic inheritance through the male germ line
- (2014) Adelheid Soubry et al. BIOESSAYS
- Base Pair Fraying in Molecular Dynamics Simulations of DNA and RNA
- (2014) Marie Zgarbová et al. Journal of Chemical Theory and Computation
- Molecular Dynamics Simulations of Nucleic Acids. From Tetranucleotides to the Ribosome
- (2014) Jiří Šponer et al. Journal of Physical Chemistry Letters
- B-DNA structure and stability: the role of hydrogen bonding, π–π stacking interactions, twist-angle, and solvation
- (2014) Jordi Poater et al. ORGANIC & BIOMOLECULAR CHEMISTRY
- GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit
- (2013) Sander Pronk et al. BIOINFORMATICS
- Effects of Cytosine Hydroxymethylation on DNA Strand Separation
- (2013) Philip M.D. Severin et al. BIOPHYSICAL JOURNAL
- 5-Methylation of Cytosine in CG:CG Base-Pair Steps: A Physicochemical Mechanism for the Epigenetic Control of DNA Nanomechanics
- (2013) Tahir I. Yusufaly et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Crystal structures of B-DNA dodecamer containing the epigenetic modifications 5-hydroxymethylcytosine or 5-methylcytosine
- (2013) Daniel Renciuk et al. NUCLEIC ACIDS RESEARCH
- DNA conformational flexibility study using phosphate backbone neutralization model
- (2013) Shiyan Xiao et al. Soft Matter
- Understanding the Connection between Epigenetic DNA Methylation and Nucleosome Positioning from Computer Simulations
- (2013) Guillem Portella et al. PLoS Computational Biology
- B-DNA Structure and Stability as Function of Nucleic Acid Composition: Dispersion-Corrected DFT Study of Dinucleoside Monophosphate Single and Double Strands
- (2013) Giampaolo Barone et al. ChemistryOpen
- The Role of Methylation in the Intrinsic Dynamics of B- and Z-DNA
- (2012) Nuri A. Temiz et al. PLoS One
- CpG underrepresentation and the bacterial CpG-specific DNA methyltransferase M.MpeI
- (2012) M. Wojciechowski et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Frontiers in Molecular Dynamics Simulations of DNA
- (2011) Alberto Pérez et al. ACCOUNTS OF CHEMICAL RESEARCH
- Tet1 and 5-hydroxymethylation
- (2011) Hao Wu et al. CELL CYCLE
- Effect of CpG methylation on DNA binding protein: Molecular dynamics simulations of the homeodomain PITX2 bound to the methylated DNA
- (2011) Si-Ya Yang et al. JOURNAL OF MOLECULAR GRAPHICS & MODELLING
- Insights into Intrastrand Cross-Link Lesions of DNA from QM/MM Molecular Dynamics Simulations
- (2011) Julian Garrec et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- B-DNA structure is intrinsically polymorphic: even at the level of base pair positions
- (2011) Tatsuya Maehigashi et al. NUCLEIC ACIDS RESEARCH
- Recognition of methylated DNA through methyl-CpG binding domain proteins
- (2011) Xueqing Zou et al. NUCLEIC ACIDS RESEARCH
- Cytosine methylation alters DNA mechanical properties
- (2011) Philip M. D. Severin et al. NUCLEIC ACIDS RESEARCH
- Tet Proteins Can Convert 5-Methylcytosine to 5-Formylcytosine and 5-Carboxylcytosine
- (2011) S. Ito et al. SCIENCE
- Implications for Damage Recognition during Dpo4-Mediated Mutagenic Bypass of m1G and m3C Lesions
- (2011) Olga Rechkoblit et al. STRUCTURE
- Origins of Specificity in Protein-DNA Recognition
- (2010) Remo Rohs et al. Annual Review of Biochemistry
- UHRF1, a modular multi-domain protein, regulates replication-coupled crosstalk between DNA methylation and histone modifications
- (2010) Hideharu Hashimoto et al. Epigenetics
- Impaired hydroxylation of 5-methylcytosine in myeloid cancers with mutant TET2
- (2010) Myunggon Ko et al. NATURE
- Mammalian cytosine methylation at a glance
- (2009) S. K. T. Ooi et al. JOURNAL OF CELL SCIENCE
- A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA
- (2009) Richard Lavery et al. NUCLEIC ACIDS RESEARCH
- Web 3DNA--a web server for the analysis, reconstruction, and visualization of three-dimensional nucleic-acid structures
- (2009) G. Zheng et al. NUCLEIC ACIDS RESEARCH
- Local DNA Topography Correlates with Functional Noncoding Regions of the Human Genome
- (2009) S. C. J. Parker et al. SCIENCE
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More