Combining principal component analysis with parameter line-searches to improve the efficacy of Metropolis–Hastings MCMC

Pathogen Growth in Insect Hosts: Inferring the Importance of Different Mechanisms Using Stochastic Models and Response-Time Data

(2014) David A. Kennedy et al.   AMERICAN NATURALIST

Pathogen Persistence in the Environment and Insect-Baculovirus Interactions: Disease-Density Thresholds, Epidemic Burnout, and Insect Outbreaks

(2012) Emma Fuller et al.   AMERICAN NATURALIST

Computational Tools for Evaluating Phylogenetic and Hierarchical Clustering Trees

(2012) John Chakerian et al.   JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS

Tracking Epidemics With Google Flu Trends Data and a State-Space SEIR Model

(2012) Vanja Dukic et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

Assessing Parameter Identifiability in Phylogenetic Models Using Data Cloning

(2012) José Miguel Ponciano et al.   SYSTEMATIC BIOLOGY

Computing Performance: Game Over or Next Level?

(2011) Samuel H. Fuller et al.   COMPUTER

Statistical inference for stochastic simulation models - theory and application

(2011) Florian Hartig et al.   ECOLOGY LETTERS

Using Parallel Computation to Improve Independent Metropolis–Hastings Based Estimation

(2011) P. Jacob et al.   JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS

Estimability and Likelihood Inference for Generalized Linear Mixed Models Using Data Cloning

(2011) Subhash R. Lele et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

Riemann manifold Langevin and Hamiltonian Monte Carlo methods

(2011) Mark Girolami et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

Within-host demographic fluctuations and correlations in early retroviral infection

(2011) T.G. Vaughan et al.   JOURNAL OF THEORETICAL BIOLOGY

Lack of confidence in approximate Bayesian computation model choice

(2011) C. P. Robert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mapping electron density in the ionosphere: A principal component MCMC algorithm

(2010) Eman Khorsheed et al.   COMPUTATIONAL STATISTICS & DATA ANALYSIS

Modeling the population dynamics of cotton bollworm Helicoverpa armigera (Hübner) (Lepidoptera: Noctuidae) over a wide area in northern China

(2010) Hongqiang Feng et al.   ECOLOGICAL MODELLING

Pathogenesis of Lymantria dispar multiple nucleopolyhedrovirus in L. dispar and mechanisms of developmental resistance

(2010) J. McNeil et al.   JOURNAL OF GENERAL VIROLOGY

Learn From Thy Neighbor: Parallel-Chain and Regional Adaptive MCMC

(2010) Radu V. Craiu et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

Demographic compensation and tipping points in climate-induced range shifts

(2010) Daniel F. Doak et al.   NATURE

Approximate Bayesian Computation (ABC) in practice

(2010) Katalin Csilléry et al.   TRENDS IN ECOLOGY & EVOLUTION

Evolution of Acute Infections and the Invasion‐Persistence Trade‐Off

(2009) Aaron A. King et al.   AMERICAN NATURALIST

Efficient parallelisation of Metropolis–Hastings algorithms using a prefetching approach

(2009) Ingvar Strid   COMPUTATIONAL STATISTICS & DATA ANALYSIS

An experimental test of the independent action hypothesis in virus-insect pathosystems

(2009) M. P. Zwart et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Acute or Chronic? Within‐Host Models with Immune Dynamics, Infection Outcome, and Parasite Evolution

(2008) Samuel Alizon et al.   AMERICAN NATURALIST

A STATE-DEPENDENT MODEL FOR THE OPTIMAL MANAGEMENT OF AN INVASIVE METAPOPULATION

(2008) Tiffany Bogich et al.   ECOLOGICAL APPLICATIONS

Modelling within-Host Spatiotemporal Dynamics of Invasive Bacterial Disease

(2008) Andrew J Grant et al.   PLOS BIOLOGY