Statistical inference for stochastic simulation models - theory and application

Disentangling the Formation of Contrasting Tree-Line Physiognomies Combining Model Selection and Bayesian Parameterization for Simulation Models

(2011) Isabel Martínez et al.   AMERICAN NATURALIST

Approximate Bayesian computation using indirect inference

(2011) Christopher C. Drovandi et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES C-APPLIED STATISTICS

Approximate Bayesian Computation in Evolution and Ecology

(2010) Mark A. Beaumont   Annual Review of Ecology Evolution and Systematics

Application of an evolutionary algorithm to the inverse parameter estimation of an individual-based model

(2010) Raphaël Duboz et al.   ECOLOGICAL MODELLING

Why is adaptation prevented at ecological margins? New insights from individual-based simulations

(2010) Jon R. Bridle et al.   ECOLOGY LETTERS

Turbulent dispersal promotes species coexistence

(2010) Heather A. Berkley et al.   ECOLOGY LETTERS

Simulating forest dynamics of a tropical montane forest in South Ecuador

(2010) Claudia Dislich et al.   Erdkunde

Likelihood-Free Inference of Population Structure and Local Adaptation in a Bayesian Hierarchical Model

(2010) E. Bazin et al.   GENETICS

Approximate Bayesian Computation: A Nonparametric Perspective

(2010) Michael G. B. Blum   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

ABC as a flexible framework to estimate demography over space and time: some cons, many pros

(2010) G. BERTORELLE et al.   MOLECULAR ECOLOGY

Statistical inference for noisy nonlinear ecological dynamic systems

(2010) Simon N. Wood   NATURE

The virtual ecologist approach: simulating data and observers

(2010) Damaris Zurell et al.   OIKOS

Dating Primate Divergences through an Integrated Analysis of Palaeontological and Molecular Data

(2010) Richard D. Wilkinson et al.   SYSTEMATIC BIOLOGY

Approximate Bayesian Computation (ABC) in practice

(2010) Katalin Csilléry et al.   TRENDS IN ECOLOGY & EVOLUTION

The pseudo-marginal approach for efficient Monte Carlo computations

(2009) Christophe Andrieu et al.   ANNALS OF STATISTICS

Simulation-based model selection for dynamical systems in systems and population biology

(2009) Tina Toni et al.   BIOINFORMATICS

Adaptive approximate Bayesian computation

(2009) M. A. Beaumont et al.   BIOMETRIKA

The use of approximate Bayesian computation in conservation genetics and its application in a case study on yellow-eyed penguins

(2009) Joao S. Lopes et al.   CONSERVATION GENETICS

A pattern-oriented modelling approach to simulating populations of grey partridge

(2009) Christopher John Topping et al.   ECOLOGICAL MODELLING

When can we distinguish between neutral and non-neutral processes in community dynamics under ecological drift?

(2009) Lasse Ruokolainen et al.   ECOLOGY LETTERS

Bayesian Computation and Model Selection Without Likelihoods

(2009) C. Leuenberger et al.   GENETICS

Approximate Bayesian Computation Without Summary Statistics: The Case of Admixture

(2009) V. C. Sousa et al.   GENETICS

Efficient Approximate Bayesian Computation Coupled With Markov Chain Monte Carlo Without Likelihood

(2009) Daniel Wegmann et al.   GENETICS

Towards a limits of acceptability approach to the calibration of hydrological models: Extending observation error

(2009) Yanli Liu et al.   JOURNAL OF HYDROLOGY

Bayesian Emulation and Calibration of a Stochastic Computer Model of Mitochondrial DNA Deletions in Substantia Nigra Neurons

(2009) Daniel A. Henderson et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

A stochastic dispersal-limited trait-based model of community dynamics

(2009) Franck Jabot   JOURNAL OF THEORETICAL BIOLOGY

Global patterns of speciation and diversity

(2009) M. A. M. de Aguiar et al.   NATURE

Stochastic modelling for quantitative description of heterogeneous biological systems

(2009) Darren J. Wilkinson   NATURE REVIEWS GENETICS

Non-linear regression models for Approximate Bayesian Computation

(2009) Michael G. B. Blum et al.   STATISTICS AND COMPUTING

A limits of acceptability approach to model evaluation and uncertainty estimation in flood frequency estimation by continuous simulation: Skalka catchment, Czech Republic

(2009) Sarka Blazkova et al.   WATER RESOURCES RESEARCH

Informal likelihood measures in model assessment: Theoretic development and investigation

(2008) Paul Smith et al.   ADVANCES IN WATER RESOURCES

Penalized loss functions for Bayesian model comparison

(2008) Martyn Plummer   BIOSTATISTICS

Projecting population trends of endangered amphibian species in the face of uncertainty: A pattern-oriented approach

(2008) Todd M. Swanack et al.   ECOLOGICAL MODELLING

The tropics: cradle, museum or casino? A dynamic null model for latitudinal gradients of species diversity

(2008) Héctor T. Arita et al.   ECOLOGY LETTERS

Inferring the parameters of the neutral theory of biodiversity using phylogenetic information and implications for tropical forests

(2008) Franck Jabot et al.   ECOLOGY LETTERS

Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems

(2008) T. Toni et al.   Journal of the Royal Society Interface

Scaling laws of marine predator search behaviour

(2008) David W. Sims et al.   NATURE

State–space models of individual animal movement

(2008) T PATTERSON et al.   TRENDS IN ECOLOGY & EVOLUTION

Demographic History of European Populations of Arabidopsis thaliana

(2008) Olivier François et al.   PLoS Genetics