Genetic control of root growth: from genes to networks

Cytokinin as a positional cue regulating lateral root spacing inArabidopsis

(2015) Ling Chang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Inference of the Arabidopsis Lateral Root Gene Regulatory Network Suggests a Bifurcation Mechanism That Defines Primordia Flanking and Central Zones

(2015) Julien Lavenus et al.   PLANT CELL

Cell-Type-Specific Cytokinin Distribution within the Arabidopsis Primary Root Apex

(2015) Ioanna Antoniadi et al.   PLANT CELL

The circadian clock rephases during lateral root organ initiation in Arabidopsis thaliana

(2015) Ute Voß et al.   Nature Communications

Programmed Cell Death Controlled by ANAC033/SOMBRERO Determines Root Cap Organ Size in Arabidopsis

(2014) Matyáš Fendrych et al.   CURRENT BIOLOGY

Hormonal control of cell division and elongation along differentiation trajectories in roots

(2014) Hirotomo Takatsuka et al.   JOURNAL OF EXPERIMENTAL BOTANY

PLETHORA gradient formation mechanism separates auxin responses

(2014) Ari Pekka Mähönen et al.   NATURE

An Arabidopsis gene regulatory network for secondary cell wall synthesis

(2014) M. Taylor-Teeples et al.   NATURE

Systems Analysis of Auxin Transport in theArabidopsisRoot Apex

(2014) Leah R. Band et al.   PLANT CELL

The Emerging Role of Reactive Oxygen Species Signaling during Lateral Root Development

(2014) C. Manzano et al.   PLANT PHYSIOLOGY

Integration of growth and patterning during vascular tissue formation in Arabidopsis

(2014) B. De Rybel et al.   SCIENCE

A Spatial Accommodation by Neighboring Cells Is Required for Organ Initiation in Arabidopsis

(2014) J. E. M. Vermeer et al.   SCIENCE

The ABA Receptor PYL8 Promotes Lateral Root Growth by Enhancing MYB77-Dependent Transcription of Auxin-Responsive Genes

(2014) Y. Zhao et al.   Science Signaling

A bHLH Complex Controls Embryonic Vascular Tissue Establishment and Indeterminate Growth in Arabidopsis

(2013) Bert De Rybel et al.   DEVELOPMENTAL CELL

The Plant Vascular System: Evolution, Development and FunctionsF

(2013) William J. Lucas et al.   Journal of Integrative Plant Biology

A map of cell type-specific auxin responses

(2013) B. O. R. Bargmann et al.   Molecular Systems Biology

Sequential induction of auxin efflux and influx carriers regulates lateral root emergence

(2013) B. Peret et al.   Molecular Systems Biology

Genome-wide association study using cellular traits identifies a new regulator of root development in Arabidopsis

(2013) Mónica Meijón et al.   NATURE GENETICS

Systems genetics approaches to understand complex traits

(2013) Mete Civelek et al.   NATURE REVIEWS GENETICS

A Kinetic Analysis of the Auxin Transcriptome Reveals Cell Wall Remodeling Proteins That Modulate Lateral Root Development in Arabidopsis

(2013) D. R. Lewis et al.   PLANT CELL

Root Systems Biology: Integrative Modeling across Scales, from Gene Regulatory Networks to the Rhizosphere

(2013) K. Hill et al.   PLANT PHYSIOLOGY

Plasticity of the Arabidopsis Root System under Nutrient Deficiencies

(2013) B. D. Gruber et al.   PLANT PHYSIOLOGY

High-resolution metabolic mapping of cell types in plant roots

(2013) A. Moussaieff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Integration of responses within and across Arabidopsis natural accessions uncovers loci controlling root systems architecture

(2013) U. Rosas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plasticity Regulators Modulate Specific Root Traits in Discrete Nitrogen Environments

(2013) Miriam L. Gifford et al.   PLoS Genetics

Gravity Sensing and Signal Transduction in Vascular Plant Primary Roots

(2012) Katherine L. Baldwin et al.   AMERICAN JOURNAL OF BOTANY

Root hydrotropism: An update

(2012) Gladys I. Cassab et al.   AMERICAN JOURNAL OF BOTANY

A Bistable Circuit Involving SCARECROW-RETINOBLASTOMA Integrates Cues to Inform Asymmetric Stem Cell Division

(2012) Alfredo Cruz-Ramírez et al.   CELL

Auxin reflux between the endodermis and pericycle promotes lateral root initiation

(2012) Peter Marhavý et al.   EMBO JOURNAL

An altered hydrotropic response (ahr1) mutant of Arabidopsis recovers root hydrotropism with cytokinin

(2012) Manuel Saucedo et al.   JOURNAL OF EXPERIMENTAL BOTANY

Auxin regulates aquaporin function to facilitate lateral root emergence

(2012) Benjamin Péret et al.   NATURE CELL BIOLOGY

Spatiotemporal Regulation of Lateral Root Organogenesis inArabidopsisby Cytokinin

(2012) Agnieszka Bielach et al.   PLANT CELL

AUX/LAX Genes Encode a Family of Auxin Influx Transporters That Perform Distinct Functions during Arabidopsis Development

(2012) B. Peret et al.   PLANT CELL

Localized Iron Supply Triggers Lateral Root Elongation in Arabidopsis by Altering the AUX1-Mediated Auxin Distribution

(2012) R. F. H. Giehl et al.   PLANT CELL

The microtubule associated protein END BINDING 1 represses root responses to mechanical cues

(2012) Laura Gleeson et al.   PLANT SCIENCE

Defective root growth triggered by oxidative stress is controlled through the expression of cell cycle-related genes

(2012) Hironaka Tsukagoshi   PLANT SCIENCE

Root phototropism: from dogma to the mechanism of blue light perception

(2012) Ulrich Kutschera et al.   PLANTA

The protein expression landscape of the Arabidopsis root

(2012) J. J. Petricka et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mathematical modeling elucidates the role of transcriptional feedback in gibberellin signaling

(2012) A. M. Middleton et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Root gravitropism is regulated by a transient lateral auxin gradient controlled by a tipping-point mechanism

(2012) L. R. Band et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Gene Regulatory Network for Root Epidermis Cell Differentiation in Arabidopsis

(2012) Angela Bruex et al.   PLoS Genetics

Non-cell-autonomous microRNA165 acts in a dose-dependent manner to regulate multiple differentiation status in the Arabidopsis root

(2011) S. Miyashima et al.   DEVELOPMENT

Cell Identity Regulators Link Development and Stress Responses in the Arabidopsis Root

(2011) Anjali S. Iyer-Pascuzzi et al.   DEVELOPMENTAL CELL

A thermodynamic switch modulates abscisic acid receptor sensitivity

(2011) Florine Dupeux et al.   EMBO JOURNAL

High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis

(2011) N. W. Breakfield et al.   GENOME RESEARCH

A stele-enriched gene regulatory network in the Arabidopsis root

(2011) S. M. Brady et al.   Molecular Systems Biology

TheArabidopsis thalianaCheckpoint Kinase WEE1 Protects against Premature Vascular Differentiation during Replication Stress

(2011) Toon Cools et al.   PLANT CELL

The WAVY GROWTH 3 E3 ligase family controls the gravitropic response in Arabidopsis roots

(2011) Tatsuya Sakai et al.   PLANT JOURNAL

Systems Genetics

(2011) J. H. Nadeau et al.   SCIENCE

Arabidopsis T-DNA insertional lines for CDC25 are hypersensitive to hydroxyurea but not to zeocin or salt stress

(2010) Natasha D. Spadafora et al.   ANNALS OF BOTANY

Mathematical Modelling of the Aux/IAA Negative Feedback Loop

(2010) A. M. Middleton et al.   BULLETIN OF MATHEMATICAL BIOLOGY

Transcriptional Regulation of ROS Controls Transition from Proliferation to Differentiation in the Root

(2010) Hironaka Tsukagoshi et al.   CELL

SCHIZORIZA Controls Tissue System Complexity in Plants

(2010) Monica Pernas et al.   CURRENT BIOLOGY

A Novel Aux/IAA28 Signaling Cascade Activates GATA23-Dependent Specification of Lateral Root Founder Cell Identity

(2010) Bert De Rybel et al.   CURRENT BIOLOGY

JACKDAW controls epidermal patterning in the Arabidopsis root meristem through a non-cell-autonomous mechanism

(2010) H. Hassan et al.   DEVELOPMENT

Nitrate-Regulated Auxin Transport by NRT1.1 Defines a Mechanism for Nutrient Sensing in Plants

(2010) Gabriel Krouk et al.   DEVELOPMENTAL CELL

Modelling and experimental analysis of hormonal crosstalk in Arabidopsis

(2010) Junli Liu et al.   Molecular Systems Biology

Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate

(2010) Annelie Carlsbecker et al.   NATURE

Spatiotemporal regulation of cell-cycle genes by SHORTROOT links patterning and growth

(2010) R. Sozzani et al.   NATURE

Arabidopsis Tyrosylprotein Sulfotransferase Acts in the Auxin/PLETHORA Pathway in Regulating Postembryonic Maintenance of the Root Stem Cell Niche

(2010) W. Zhou et al.   PLANT CELL

SOMBRERO, BEARSKIN1, and BEARSKIN2 Regulate Root Cap Maturation in Arabidopsis

(2010) T. Bennett et al.   PLANT CELL

The bHLH Transcription Factor POPEYE Regulates Response to Iron Deficiency in Arabidopsis Roots

(2010) T. A. Long et al.   PLANT CELL

Inhibition of phospholipase C disrupts cytoskeletal organization and gravitropic growth in Arabidopsis roots

(2010) Zornitza Andreeva et al.   PLANTA

Bimodular auxin response controls organogenesis in Arabidopsis

(2010) I. De Smet et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana

(2010) E. A. Vidal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mutations of cellulose synthase (CESA1) phosphorylation sites modulate anisotropic cell expansion and bidirectional mobility of cellulose synthase

(2010) S. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Oscillating Gene Expression Determines Competence for Periodic Arabidopsis Root Branching

(2010) Miguel A. Moreno-Risueno et al.   SCIENCE

Secreted Peptide Signals Required for Maintenance of Root Stem Cell Niche in Arabidopsis

(2010) Y. Matsuzaki et al.   SCIENCE

Genetic and genomic dissection of maize root development and architecture

(2009) Frank Hochholdinger et al.   CURRENT OPINION IN PLANT BIOLOGY

Auxin modulates the transition from the mitotic cycle to the endocycle in Arabidopsis

(2009) T. Ishida et al.   DEVELOPMENT

The gene regulatory network for root epidermal cell-type pattern formation in Arabidopsis

(2009) J. Schiefelbein et al.   JOURNAL OF EXPERIMENTAL BOTANY

Systems genetics of complex traits in Drosophila melanogaster

(2009) Julien F Ayroles et al.   NATURE GENETICS

The genetics of quantitative traits: challenges and prospects

(2009) Trudy F. C. Mackay et al.   NATURE REVIEWS GENETICS

Two Seven-Transmembrane Domain MILDEW RESISTANCE LOCUS O Proteins Cofunction in Arabidopsis Root Thigmomorphogenesis

(2009) Z. Chen et al.   PLANT CELL

An Auxin Gradient and Maximum in the Arabidopsis Root Apex Shown by High-Resolution Cell-Specific Analysis of IAA Distribution and Synthesis

(2009) S. V. Petersson et al.   PLANT CELL

Real-Time Imaging of Cellulose Reorientation during Cell Wall Expansion in Arabidopsis Roots

(2009) C. T. Anderson et al.   PLANT PHYSIOLOGY

Arabidopsis lateral root development: an emerging story

(2009) Benjamin Péret et al.   TRENDS IN PLANT SCIENCE

A Feedback Mechanism Controlling SCRAMBLED Receptor Accumulation and Cell-Type Pattern in Arabidopsis

(2008) Su-Hwan Kwak et al.   CURRENT BIOLOGY

The NAC Domain Transcription Factors FEZ and SOMBRERO Control the Orientation of Cell Division Plane in Arabidopsis Root Stem Cells

(2008) Viola Willemsen et al.   DEVELOPMENTAL CELL

The auxin influx carrier LAX3 promotes lateral root emergence

(2008) Kamal Swarup et al.   NATURE CELL BIOLOGY

Phosphate Availability Alters Lateral Root Development in Arabidopsis by Modulating Auxin Sensitivity via a Mechanism Involving the TIR1 Auxin Receptor

(2008) C.-A. Perez-Torres et al.   PLANT CELL

Hormonal interactions during root tropic growth: hydrotropism versus gravitropism

(2008) Hideyuki Takahashi et al.   PLANT MOLECULAR BIOLOGY

Auxin acts as a local morphogenetic trigger to specify lateral root founder cells

(2008) J. G. Dubrovsky et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cell-specific nitrogen responses mediate developmental plasticity

(2008) M. L. Gifford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Receptor-Like Kinase ACR4 Restricts Formative Cell Divisions in the Arabidopsis Root

(2008) I. De Smet et al.   SCIENCE

Cell Identity Mediates the Response of Arabidopsis Roots to Abiotic Stress

(2008) J. R. Dinneny et al.   SCIENCE

A Genetic Framework for the Control of Cell Division and Differentiation in the Root Meristem

(2008) R. D. Ioio et al.   SCIENCE

A Mutual Support Mechanism through Intercellular Movement of CAPRICE and GLABRA3 Can Pattern the Arabidopsis Root Epidermis

(2008) Natasha Saint Savage et al.   PLOS BIOLOGY

Root System Architecture from Coupling Cell Shape to Auxin Transport

(2008) Marta Laskowski et al.   PLOS BIOLOGY