An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana

Mining Arabidopsis thaliana RNA-seq data with Integrated Genome Browser reveals stress-induced alternative splicing of the putative splicing regulator SR45a

(2012) Alyssa A. Gulledge et al.   AMERICAN JOURNAL OF BOTANY

Transcriptome survey reveals increased complexity of the alternative splicing landscape inArabidopsis

(2012) Yamile Marquez et al.   GENOME RESEARCH

Alternative splicing in plants – coming of age

(2012) Naeem H. Syed et al.   TRENDS IN PLANT SCIENCE

The Role of Polypyrimidine Tract-Binding Proteins and Other hnRNP Proteins in Plant Splicing Regulation

(2012) Andreas Wachter et al.   Frontiers in Plant Science

Deciphering the Plant Splicing Code: Experimental and Computational Approaches for Predicting Alternative Splicing and Splicing Regulatory Elements

(2012) Anireddy S. N. Reddy et al.   Frontiers in Plant Science

LAMMER kinase Kic1 is involved in pre-mRNA processing

(2011) Zhaohua Tang et al.   EXPERIMENTAL CELL RESEARCH

Structure Function Analysis of an ADP-ribosyltransferase Type III Effector and Its RNA-binding Target in Plant Immunity

(2011) Byeong-ryool Jeong et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Multiple reference genomes and transcriptomes for Arabidopsis thaliana

(2011) Xiangchao Gan et al.   NATURE

Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis

(2011) Maria Kalyna et al.   NUCLEIC ACIDS RESEARCH

Nonsense-Mediated mRNA Decay Factors, UPF1 and UPF3, Contribute to Plant Defense

(2011) Hee-Jeong Jeong et al.   PLANT AND CELL PHYSIOLOGY

Localization and Dynamics of Nuclear Speckles in Plants

(2011) A. S. N. Reddy et al.   PLANT PHYSIOLOGY

Reversible Photoswitchable DRONPA-s Monitors Nucleocytoplasmic Transport of an RNA-Binding Protein in Transgenic Plants

(2011) Martina Lummer et al.   TRAFFIC

DEGRADE, MOVE, REGROUP: signaling control of splicing proteins

(2011) Florian Heyd et al.   TRENDS IN BIOCHEMICAL SCIENCES

RNA-based regulation in the plant circadian clock

(2011) Dorothee Staiger et al.   TRENDS IN PLANT SCIENCE

Global transcript profiling of transgenic plants constitutively overexpressing the RNA-binding protein AtGRP7

(2010) Corinna Streitner et al.   BMC PLANT BIOLOGY

Genome-wide Identification of Polycomb-Associated RNAs by RIP-seq

(2010) Jing Zhao et al.   MOLECULAR CELL

A methyl transferase links the circadian clock to the regulation of alternative splicing

(2010) Sabrina E. Sanchez et al.   NATURE

Deciphering the splicing code

(2010) Yoseph Barash et al.   NATURE

Position-dependent alternative splicing activity revealed by global profiling of alternative splicing events regulated by PTB

(2010) Miriam Llorian et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Implementing a Rational and Consistent Nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR Proteins) in Plants

(2010) Andrea Barta et al.   PLANT CELL

Polypyrimidine tract-binding protein homologues from Arabidopsis underlie regulatory circuits based on alternative splicing and downstream control

(2010) Eva Stauffer et al.   PLANT JOURNAL

Arginine methylation mediated by the Arabidopsis homolog of PRMT5 is essential for proper pre-mRNA splicing

(2010) X. Deng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantitative Analysis of Single-Molecule RNA-Protein Interaction

(2009) Alexander Fuhrmann et al.   BIOPHYSICAL JOURNAL

Genome-wide Analysis of PTB-RNA Interactions Reveals a Strategy Used by the General Splicing Repressor to Modulate Exon Inclusion or Skipping

(2009) Yuanchao Xue et al.   MOLECULAR CELL

Involvement of the nuclear cap-binding protein complex in alternative splicing in Arabidopsis thaliana

(2009) Katarzyna Dorota Raczynska et al.   NUCLEIC ACIDS RESEARCH

The RNA Binding Protein ELF9 Directly Reduces SUPPRESSOR OF OVEREXPRESSION OF CO1 Transcript Levels in Arabidopsis, Possibly via Nonsense-Mediated mRNA Decay

(2009) H.-R. Song et al.   PLANT CELL

Arabidopsis RNA immunoprecipitation

(2009) Lionel C. Terzi et al.   PLANT JOURNAL

Two Alternatively Spliced Isoforms of the Arabidopsis SR45 Protein Have Distinct Roles during Normal Plant Development

(2009) X.-N. Zhang et al.   PLANT PHYSIOLOGY

The RNA structure alignment ontology

(2009) J. W. Brown et al.   RNA

Autoregulation of Fox protein expression to produce dominant negative splicing factors

(2009) A. Damianov et al.   RNA

The 1001 Genomes Project for Arabidopsis thaliana

(2009) Detlef Weigel et al.   GENOME BIOLOGY

Genome-wide analyses of alternative splicing in plants: Opportunities and challenges

(2008) W. B. Barbazuk et al.   GENOME RESEARCH

Changes in Conformational Dynamics of mRNA uponAtGRP7 Binding Studied by Fluorescence Correlation Spectroscopy

(2008) Mark Schüttpelz et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis

(2008) Jan C. Schöning et al.   NUCLEIC ACIDS RESEARCH

The small glycine-rich RNA binding protein At GRP7 promotes floral transition in Arabidopsis thaliana

(2008) Corinna Streitner et al.   PLANT JOURNAL