Article
Chemistry, Multidisciplinary
Wenkai Zhu, Alex J. Guseman, Fatema Bhinderwala, Manman Lu, Xun-Cheng Su, Angela M. Gronenborn
Summary: In-cell NMR spectroscopy is a powerful tool for studying protein behavior in physiological environments. However, interactions with cellular components can often broaden resonances beyond detection in commonly used H-1-N-15 HSQC spectra of globular proteins. In contrast, F-19 spectra in mammalian cells readily show signals. By using stable, rigid Ln(III) chelate pendants, attached via non-reducible thioether bonds, F-19 paramagnetic relaxation enhancements provide an effective method for accurately assessing protein conformations in cellular milieu.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
(2022)
Article
Chemistry, Organic
Hefei Yang, Shu-Ning Lu, Yufei Song, Zhengkai Chen, Xiao-Feng Wu
Summary: A simple and direct method for synthesizing 3-trifluoromethyl-1,2,4-triazoles via copper-mediated [3 + 2] cycloaddition of trifluoroacetimidoyl chlorides and N-isocyanoiminotriphenylphosphorane (NIITP) has been described. The use of Mo(CO)(6) as an effective promoter to activate NIITP allows for easily accessible reagents, mild reaction conditions, a wide substrate scope, high efficiency, and reproducibility on a 3 mmol scale.
ORGANIC CHEMISTRY FRONTIERS
(2021)
Article
Chemistry, Multidisciplinary
Alexey Sudakov, Bozana Knezic, Martin Hengesbach, Boris Fuertig, Elke Stirnal, Harald Schwalbe
Summary: More than 170 post-transcriptional modifications of RNAs have been identified. However, the detailed investigation of these modifications is limited due to the difficulty in producing large RNAs containing these modifications. This study reports the chemo-enzymatic synthesis of RNA modifications and fluorine-modified analogs, allowing the synthesis of large RNAs. The incorporation of labeled nucleotides in the riboswitch demonstrated the applicability of the modified large RNAs in characterizing RNA fold and dynamics.
CHEMISTRY-A EUROPEAN JOURNAL
(2023)
Article
Chemistry, Organic
Asmo Aro-Heinila, Assi Lepisto, Antti Aarela, Tuomas Antti Lonnberg, Pasi Virta
Summary: A novel organomercury nucleobase analogue was synthesized and incorporated into an oligonucleotide, followed by mercuration. The affinity of the organomercury nucleobase analogue towards complementary strands was studied using UV, CD, and F-19 NMR spectroscopy, revealing distinct affinities for different canonical nucleobases. Results showed that the F-19 resonance signal was sensitive to local environmental changes, providing valuable information on the binding of the mercurated oligonucleotide to complementary strands at varying temperatures.
JOURNAL OF ORGANIC CHEMISTRY
(2022)
Article
Chemistry, Physical
Coral Mycroft, Mathias Nilsson, Gareth A. Morris, Laura Castanar
Summary: A general pure shift method is presented for obtaining ultra-high resolution H-1 NMR spectra by suppressing both homonuclear and heteronuclear J-couplings. Its usefulness is demonstrated in the analysis of fluorine- and phosphorus-containing compounds of pharmaceutical and biochemical interest.
Article
Biochemistry & Molecular Biology
Angela M. Gronenborn
Summary: Nuclear magnetic resonance (NMR) spectroscopy is a versatile tool for studying biological systems, and fluorine-19 NMR is an attractive and sensitive alternative method that offers rich information.
Article
Chemistry, Analytical
Mincheol Jang, Min Su Han
Summary: 19F NMR spectroscopy is a noninvasive analytical technique that helps understand complex natural phenomena at the atomic level. However, current referencing techniques for 1H NMR have limitations when applied to heteronuclear NMR. In this study, a new strategy using an internal standard method is proposed to improve the consistency of 19F NMR referencing. The results show that this strategy is robust and reproducible, allowing reliable analyses of multiple analytes simultaneously.
ANALYTICAL CHEMISTRY
(2022)
Article
Chemistry, Medicinal
Lev L. Gervits, Andrey L. Sigan, Alina A. Markova, Mikhail V. Gulyaev, Olga S. Pavlova, Ratislav M. Ozhiganov, Yury A. Pirogov
Summary: F-19 MRI is a radiation-free technique for tracking and quantifying indicators in vivo. New F-19-MRI labels were developed, which showed high contrast properties and good biological inertness. These compounds, 1,2-bis(perfluoro-tert-butoxy)ethane and 1,3-bis(perfluoro-tert-butyl)propane, demonstrated promise for use in F-19 MRI applications.
Article
Chemistry, Medicinal
Omowumi Akinjole, Abrar S. Alnafisah, Fohona S. Coulibaly, Nathan A. Oyler, Bi-Botti C. Youan
Summary: The real time quantification and in vitro release monitoring of maraviroc (MVC) was successfully achieved using the F-19 qNMR method. The method showed good linearity, detection limits, and quantification limits, and proved to be effective in studying drug release kinetics.
JOURNAL OF PHARMACEUTICAL SCIENCES
(2021)
Article
Chemistry, Inorganic & Nuclear
Sara A. Maute, Alexander A. Marchione, Elizabeth L. Diaz
Summary: The popular multiplicity-edited heteronuclear single quantum coherence experiment has been modified for 19F-13C experiments by inserting broadband inversion and refocusing pulses in 19F. This modification allows for distinguishing CF3 from CF2X and CF2 from CFX (X = O or halide). The experiment results show that phase distortions can be minimized by carefully selecting the value of JCF, and analogous editing can be performed by phase.
JOURNAL OF FLUORINE CHEMISTRY
(2023)
Article
Chemistry, Inorganic & Nuclear
Alexander A. Marchione, Elizabeth L. Diaz
Summary: This article presents variants of the heteronuclear multiple quantum coherence (HMQC) experiment in which only H-1 -C-13 pairs that interact with a F-19 nucleus report. Two versions of the experiment are described, one focusing on scalar coupling between H-1 and F-19 and the other on nuclear Overhauser effect-based interactions between H-1 and F-19. The experiment can reveal directly bound H-1-C-13 pairs or longer range H-1-C-13 correlations. Example spectra of trifluorotoluene and two complex pharmaceutical molecules are shown.
JOURNAL OF FLUORINE CHEMISTRY
(2022)
Article
Chemistry, Inorganic & Nuclear
Yu. S. Kudyakova, P. A. Slepukhin, I. N. Ganebnykh, Ya. V. Burgart, V. I. Saloutin, D. N. Bazhin
Summary: The functionalized lithium CF3-beta-diketonate reacts with trivalent rare-earth metal salts in methanol to form homobinuclear and heterobi(tri)nuclear complexes, depending on the nature of the transition metal and anion. These complexes were characterized by X-ray structure analysis and mass spectrometry, revealing a range of different structures. The isomeric forms of the diketonate in a solution of deuterated dimethyl sulfoxide were studied using F-19 NMR spectroscopy.
RUSSIAN JOURNAL OF COORDINATION CHEMISTRY
(2021)
Article
Chemistry, Medicinal
Koji Matsuoka, Yuya Suzuki, Tetsuo Koyama, Takahiko Matsushita, Ken Hatano
BIOORGANIC & MEDICINAL CHEMISTRY LETTERS
(2020)
Article
Chemistry, Medicinal
Takahiko Matsushita, Monique Nami Danyel, Tetsuo Koyama, Ken Hatano, Koji Matsuoka
BIOORGANIC & MEDICINAL CHEMISTRY LETTERS
(2020)
Article
Biochemistry & Molecular Biology
Shun Hayakawa, Takahiko Matsushita, Yasuhiro Yokoi, Hajime Wakui, Fayna Garcia-Martin, Hiroshi Hinou, Koji Matsuoka, Kazuhiro Nouso, Toshiya Kamiyama, Akinobu Taketomi, Shin-Ichiro Nishimura
Article
Chemistry, Physical
Koji Matsuoka, Shohei Yamashita, Tetsuo Koyama, Takahiko Matsushita, Ken Hatano
JOURNAL OF MOLECULAR STRUCTURE
(2020)
Article
Chemistry, Organic
Jianhong Zhang, Tetsuo Koyama, Takahiko Matsushita, Ken Hatano, Koji Matsuoka
Summary: Efficient synthesis of lauryl thioglycoside of Neu5Gc was achieved from a known thioglycoside of Neu5Ac. The reactivity of Neu5Gc thioglycoside in O-glycosidation was investigated, showing good activities with simple alcohols. The thioglycoside also demonstrated potential as a glycosyl donor in reactions with glucose and lactose derivatives.
TETRAHEDRON LETTERS
(2021)
Article
Chemistry, Medicinal
Dimitrijs Lubriks, Rimants Zogota, Vikram A. Sarpe, Takahiko Matsushita, Girish C. Sati, Klara Haldimann, Marina Gysin, Erik C. Boettger, Andrea Vasella, Edgars Suna, Sven N. Hobbie, David Crich
Summary: Propylamycin is a next generation amino-glycoside antibiotic that has increased antibacterial potency compared to its parent compound and reduced ototoxicity. However, it is inactivated by a specific enzyme, leading researchers to study various derivatives in order to overcome this issue.
ACS INFECTIOUS DISEASES
(2021)
Article
Chemistry, Medicinal
Koji Matsuoka, Takayuki Kaneshima, Ryota Adachi, Jiei Sasaki, Takao Hashiguchi, Tetsuo Koyama, Takahiko Matsushita, Ken Hatano
Summary: A water-soluble glycomonomer with SLac moiety was prepared using Schmidt's protocol, and three glycopolymers with different sugar densities were obtained through polymerization, with the one with low sugar density exhibiting the highest inhibitory potency.
BIOORGANIC & MEDICINAL CHEMISTRY LETTERS
(2021)
Article
Polymer Science
Koji Matsuoka, Masaki Nakagawa, Tetsuo Koyama, Takahiko Matsushita, Ken Hatano
Summary: This study investigated the interaction between glycopolymers and proteins by varying the length and density of carbohydrate residues. The results showed that the glycopolymers with the longest methylene length and a specific ratio exhibited the highest interaction strength.
EUROPEAN POLYMER JOURNAL
(2022)
Article
Chemistry, Organic
Koji Matsuoka, Daiki Endo, Ryota Adachi, Tetsuo Koyama, Takahiko Matsushita, Ken Hatano
Summary: Verification of acetylation for a cyclic α-N-β-D-furanose was achieved and the corresponding mono alcohol was obtained. Structural elucidation of the derivatives was conducted based on NMR spectroscopy. Complete protection by esterification and methylation yielded fully protected compounds, with NMR spectroscopy confirming the success of the reaction.
TETRAHEDRON LETTERS
(2022)
Article
Biochemistry & Molecular Biology
Takahiko Matsushita, Naomichi Toda, Tetsuo Koyama, Ken Hatano, Koji Matsuoka
Summary: In this study, N-acetylglucosamine-terminated hexavalent carbosilane dendrimers were synthesized and their binding to wheat germ agglutinin (WGA) was investigated. The results showed that these glycodendrimers exhibited high affinity with WGA, with 1a and 1b showing the strongest affinity.
BIOORGANIC CHEMISTRY
(2022)
Article
Chemistry, Multidisciplinary
Takahiko Matsushita, Hiroshi Hinou, Shin-Ichiro Nishimura
Summary: We demonstrate that generation 6 polyamidoamine dendrimer with a diameter of 7.2 nm and molecular weight of 58,048 Da provides an ideal platform for highly efficient enzymatic glycosylation of peripheral bulky glycopeptidic substrates.
Editorial Material
Biochemistry & Molecular Biology
Takahiko Matsushita
TRENDS IN GLYCOSCIENCE AND GLYCOTECHNOLOGY
(2022)
Article
Chemistry, Multidisciplinary
Takahiko Matsushita, Naoto Maruyama, Tetsuo Koyama, Ken Hatano, Koji Matsuoka
Summary: This study evaluated the potencies of dibromopyridazinediones with mono- and double-biotin groups as cysteine-selective biotinylation reagents by conjugating them with a goat anti-mouse IgG Fab fragment. The results showed that these reagents can introduce biotin groups into the reduced Fab and re-bridge the disulfide moiety.
Article
Polymer Science
Ryota Adachi, Takahiko Matsushita, Tetsuo Koyama, Ken Hatano, Koji Matsuoka
Summary: A polymerizable alcohol with 9 PEG repeats was prepared to imitate an oligosaccharide. Sialyl alpha(2 -> 3) lactose, the sugar moiety of GM3 ganglioside, was also prepared and condensed with the polymerizable alcohol to form the desired glycomonomer, which was further polymerized with or without acrylamide to yield water-soluble glycopolymers. The glycopolymers exhibited higher affinities compared to those with shorter aglycon moieties.
Article
Biochemistry & Molecular Biology
Michael G. Pirrone, Takahiko Matsushita, Andrea Vasella, David Crich
CARBOHYDRATE RESEARCH
(2020)