Development and use of molecular markers: past and present

Analysis of Genetic Diversity and Phylogenetic Relationships inCrocus Genusof Iran Using Inter-Retrotransposon Amplified Polymorphism

(2014) S.S. Alavi-Kia et al.   BIOTECHNOLOGY & BIOTECHNOLOGICAL EQUIPMENT

A comprehensive genetic map of sugarcane that provides enhanced map coverage and integrates high-throughput Diversity Array Technology (DArT) markers

(2014) Karen S Aitken et al.   BMC GENOMICS

An evaluation of genotyping by sequencing (GBS) to map the Breviaristatum-e (ari-e) locus in cultivated barley

(2014) Hui Liu et al.   BMC GENOMICS

Changes in allelic frequency over time in European bread wheat (Triticum aestivum L.) varieties revealed using DArT and SSR markers

(2014) Jihad Orabi et al.   EUPHYTICA

Detection and mapping of QTL for temperature tolerance and body size in Chinook salmon (Oncorhynchus tshawytscha) using genotyping by sequencing

(2014) Meredith V. Everett et al.   Evolutionary Applications

Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha)

(2014) Wesley A. Larson et al.   Evolutionary Applications

Genome-wide association studies of agronomic and quality traits in a set of German winter barley (Hordeum vulgare L.) cultivars using Diversity Arrays Technology (DArT)

(2014) Jeannette Lex et al.   JOURNAL OF APPLIED GENETICS

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

(2014) Jeffrey C. Glaubitz et al.   PLoS One

Genetic diversity analysis of yellow mustard (Sinapis alba L.) germplasm based on genotyping by sequencing

(2013) Yong-Bi Fu et al.   GENETIC RESOURCES AND CROP EVOLUTION

Development of novel EST-derived resistance gene markers in hop (Humulus lupulus L.)

(2013) Aljaz Majer et al.   MOLECULAR BREEDING

The use of genotyping by sequencing in blackcurrant (Ribes nigrum): developing high-resolution linkage maps in species without reference genome sequences

(2013) Joanne Russell et al.   MOLECULAR BREEDING

Diversity, genetic mapping, and signatures of domestication in the carrot (Daucus carota L.) genome, as revealed by Diversity Arrays Technology (DArT) markers

(2013) Dariusz Grzebelus et al.   MOLECULAR BREEDING

Comparative analysis of diversification and population structure of kenaf (Hibiscus cannabinus L.) and roselle (H. sabdariffa L.) using SSR and RGA (resistance gene analogue) markers

(2013) Pratik Satya et al.   PLANT SYSTEMATICS AND EVOLUTION

An Improved Genotyping by Sequencing (GBS) Approach Offering Increased Versatility and Efficiency of SNP Discovery and Genotyping

(2013) Humira Sonah et al.   PLoS One

SLAF-seq: An Efficient Method of Large-Scale De Novo SNP Discovery and Genotyping Using High-Throughput Sequencing

(2013) Xiaowen Sun et al.   PLoS One

Genome-Wide SNP and STR Discovery in the Japanese Crested Ibis and Genetic Diversity among Founders of the Japanese Population

(2013) Yukio Taniguchi et al.   PLoS One

Development of COS-SNP and HRM markers for high-throughput and reliable haplotype-based detection of Lr14a in durum wheat (Triticum durum Desf.)

(2013) Irma Terracciano et al.   THEORETICAL AND APPLIED GENETICS

Development of 15 microsatellite loci from mulloway, Argyrosomus japonicus (Pisces: Sciaenidae) using next generation sequencing and an assessment of their cross amplification in other sciaenids

(2013) Thomas C. Barnes et al.   Conservation Genetics Resources

Double-restriction-site-associated DNA (dRAD) approach for fast microsatellite marker development in Eurasian perch (Perca fluviatilis L.)

(2013) Lilian Pukk et al.   Conservation Genetics Resources

Catalyzing plant science research with RNA-seq

(2013) Laetitia B. B. Martin et al.   Frontiers in Plant Science

Review of tandem repeat search tools: a systematic approach to evaluating algorithmic performance

(2012) K. G. Lim et al.   BRIEFINGS IN BIOINFORMATICS

Random genomic scans at microsatellite loci for genetic diversity estimation in cold-adapted Lepidium latifolium

(2012) Atul Grover et al.   Plant Genetic Resources-Characterization and Utilization

Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach

(2012) Jesse A. Poland et al.   PLoS One

Mapping and Quantitative Trait Loci Analysis of Drought Tolerance in a Spring Wheat Population Using Amplified Fragment Length Polymorphism and Diversity Array Technology Markers

(2011) Lauren M. Alexander et al.   CROP SCIENCE

Diversity Array Technology Markers: Genetic Diversity Analyses and Linkage Map Construction in Rapeseed (Brassica napus L.)

(2011) H. Raman et al.   DNA RESEARCH

Rise of the machines - recommendations for ecologists when using next generation sequencing for microsatellite development

(2011) MICHAEL G. GARDNER et al.   Molecular Ecology Resources

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Development of a molecular linkage map of pearl millet integrating DArT and SSR markers

(2011) A. Supriya et al.   THEORETICAL AND APPLIED GENETICS

High-throughput SNP discovery and genotyping in durum wheat (Triticum durum Desf.)

(2011) Daniele Trebbi et al.   THEORETICAL AND APPLIED GENETICS

Searching microsatellites in DNA sequences: approaches used and tools developed

(2011) Atul Grover et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Cost-Effective, Species-Specific Microsatellite Development for the Endangered Dwarf Bulrush (Typha minima) Using Next-Generation Sequencing Technology

(2010) D. Csencsics et al.   JOURNAL OF HEREDITY

A high-density Diversity Arrays Technology (DArT) microarray for genome-wide genotyping in Eucalyptus

(2010) Carolina P Sansaloni et al.   Plant Methods

Development of highly polymorphic SNP markers from the complexity reduced portion of maize [Zea mays L.] genome for use in marker-assisted breeding

(2010) Jafar A. Mammadov et al.   THEORETICAL AND APPLIED GENETICS

Fast, cost-effective development of species-specific microsatellite markers by genomic sequencing

(2009) Jawad Abdelkrim et al.   BIOTECHNIQUES

Potyviral resistance derived from cultivars ofPhaseolus vulgariscarryingbc-3is associated with the homozygotic presence of a mutatedeIF4Eallele

(2009) MASOUD NADERPOUR et al.   MOLECULAR PLANT PATHOLOGY

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Design of a High Density SNP Genotyping Assay in the Pig Using SNPs Identified and Characterized by Next Generation Sequencing Technology

(2009) Antonio M. Ramos et al.   PLoS One

Development of microsatellite markers in potato and their transferability in some members of Solanaceae

(2009) Atul Grover et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Comparative mapping of Brassica juncea and Arabidopsis thaliana using Intron Polymorphism (IP) markers: homoeologous relationships, diversification and evolution of the A, B and C Brassica genomes

(2008) Priya Panjabi et al.   BMC GENOMICS

SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries

(2008) Curtis P Van Tassell et al.   NATURE METHODS

Genome-wide identification of microsatellites in white clover (Trifolium repens L.) using FIASCO and phpSSRMiner

(2008) Yan Zhang et al.   Plant Methods

Start Codon Targeted (SCoT) Polymorphism: A Simple, Novel DNA Marker Technique for Generating Gene-Targeted Markers in Plants

(2008) Bertrand C. Y. Collard et al.   PLANT MOLECULAR BIOLOGY REPORTER

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One