Pharmacovigilance Using Clinical Notes

Polypharmacy: Misleading, but manageable

(2016) Reamer Bushardt   Clinical Interventions in Aging

Multivariate and Propensity Score Matching Software with Automated Balance Optimization: TheMatchingPackage forR

(2015) Jasjeet S. Sekhon   Journal of Statistical Software

An overview of MetaMap: historical perspective and recent advances

(2014) Alan R Aronson et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Advancing the Science for Active Surveillance: Rationale and Design for the Observational Medical Outcomes Partnership

(2013) Paul E. Stang et al.   ANNALS OF INTERNAL MEDICINE

The Need for Translational Research on Drug–Drug Interactions

(2012) S Hennessy et al.   CLINICAL PHARMACOLOGY & THERAPEUTICS

Novel Data-Mining Methodologies for Adverse Drug Event Discovery and Analysis

(2012) R Harpaz et al.   CLINICAL PHARMACOLOGY & THERAPEUTICS

Active Safety Monitoring of Newly Marketed Medications in a Distributed Data Network: Application of a Semi-Automated Monitoring System

(2012) J J Gagne et al.   CLINICAL PHARMACOLOGY & THERAPEUTICS

A few useful things to know about machine learning

(2012) Pedro Domingos   COMMUNICATIONS OF THE ACM

Modeling temporal relationships in large scale clinical associations

(2012) David A Hanauer et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Emerging practices for mapping and linking life sciences data using RDF — A case series

(2012) M. Scott Marshall et al.   Journal of Web Semantics

Using Electronic Health Care Records for Drug Safety Signal Detection

(2012) Martijn J. Schuemie et al.   MEDICAL CARE

Electronic healthcare databases for active drug safety surveillance: is there enough leverage?

(2012) Preciosa M. Coloma et al.   PHARMACOEPIDEMIOLOGY AND DRUG SAFETY

Empirical assessment of methods for risk identification in healthcare data: results from the experiments of the Observational Medical Outcomes Partnership

(2012) Patrick B. Ryan et al.   STATISTICS IN MEDICINE

Automatic Filtering and Substantiation of Drug Safety Signals

(2012) Anna Bauer-Mehren et al.   PLoS Computational Biology

‘Global Trigger Tool’ Shows That Adverse Events In Hospitals May Be Ten Times Greater Than Previously Measured

(2011) David C. Classen et al.   HEALTH AFFAIRS

Application of Electronic Health Records to the Joint Commission's 2011 National Patient Safety Goals

(2011) Ryan P. Radecki et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Automated concept-level information extraction to reduce the need for custom software and rules development

(2011) Leonard W D'Avolio et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Overcoming barriers to NLP for clinical text: the role of shared tasks and the need for additional creative solutions

(2011) Wendy W Chapman et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

UMLS content views appropriate for NLP processing of the biomedical literature vs. clinical text

(2010) Dina Demner-Fushman et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Drug safety surveillance using de-identified EMR and claims data: issues and challenges

(2010) Prakash M Nadkarni   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications

(2010) Guergana K Savova et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

A side effect resource to capture phenotypic effects of drugs

(2010) Michael Kuhn et al.   Molecular Systems Biology

Achieving a Nationwide Learning Health System

(2010) C. P. Friedman et al.   Science Translational Medicine

Comparison of concept recognizers for building the Open Biomedical Annotator

(2009) Nigam H Shah et al.   BMC BIOINFORMATICS

Decision support methods for the detection of adverse events in post-marketing data

(2009) M. Hauben et al.   DRUG DISCOVERY TODAY

High-dimensional Propensity Score Adjustment in Studies of Treatment Effects Using Health Care Claims Data

(2009) Sebastian Schneeweiss et al.   EPIDEMIOLOGY

The Unreasonable Effectiveness of Data

(2009) Alon Halevy et al.   IEEE INTELLIGENT SYSTEMS

ConText: An algorithm for determining negation, experiencer, and temporal status from clinical reports

(2009) Henk Harkema et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Recognizing Obesity and Comorbidities in Sparse Data

(2009) O. Uzuner   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Active Computerized Pharmacovigilance Using Natural Language Processing, Statistics, and Electronic Health Records: A Feasibility Study

(2009) X. Wang et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Managing Drug-Risk Information — What to Do with All Those New Numbers

(2009) Jerry Avorn et al.   NEW ENGLAND JOURNAL OF MEDICINE

Quantitative signal detection using spontaneous ADR reporting

(2009) A. Bate et al.   PHARMACOEPIDEMIOLOGY AND DRUG SAFETY

Data mining on electronic health record databases for signal detection in pharmacovigilance: which events to monitor?

(2009) Gianluca Trifirò et al.   PHARMACOEPIDEMIOLOGY AND DRUG SAFETY

Repurposing the Clinical Record: Can an Existing Natural Language Processing System De-identify Clinical Notes?

(2008) F. P. Morrison et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION