Transmission of Non-B HIV Subtypes in the United Kingdom Is Increasingly Driven by Large Non-Heterosexual Transmission Clusters

The increasing genetic diversity of HIV-1 in the UK, 2002–2010

(2016)   AIDS

Phylogenetic analyses reveal HIV-1 infections between men misclassified as heterosexual transmissions

(2014) Stéphane Hué et al.   AIDS

Characteristics of Patients Recently Infected with HIV-1 Non-B Subtypes in France: a Nested Study within the Mandatory Notification System for New HIV Diagnoses

(2014) D. Brand et al.   JOURNAL OF CLINICAL MICROBIOLOGY

The Role of Viral Introductions in Sustaining Community-Based HIV Epidemics in Rural Uganda: Evidence from Spatial Clustering, Phylogenetics, and Egocentric Transmission Models

(2014) Mary K. Grabowski et al.   PLOS MEDICINE

Automated analysis of phylogenetic clusters

(2013) Manon Ragonnet-Cronin et al.   BMC BIOINFORMATICS

Large-Scale Analysis of the Prevalence and Geographic Distribution of HIV-1 Non-B Variants in the United States

(2013) M. T. Pyne et al.   JOURNAL OF CLINICAL MICROBIOLOGY

HIV-1 subtype distribution and its demographic determinants in newly diagnosed patients in Europe suggest highly compartmentalized epidemics

(2013) Ana B Abecasis et al.   Retrovirology

A new method to assign country of HIV infection among heterosexuals born abroad and diagnosed with HIV

(2012) Brian D. Rice et al.   AIDS

Increasing HIV-1 Non-B Subtype Primary Infections in Patients in France and Effect of HIV Subtypes on Virological and Immunological Responses to Combined Antiretroviral Therapy

(2012) Marie-Laure Chaix et al.   CLINICAL INFECTIOUS DISEASES

Simple Epidemiological Dynamics Explain Phylogenetic Clustering of HIV from Patients with Recent Infection

(2012) Erik M. Volz et al.   PLoS Computational Biology

Global trends in molecular epidemiology of HIV-1 during 2000–2007

(2011) Joris Hemelaar et al.   AIDS

Transmission Network Parameters Estimated From HIV Sequences for a Nationwide Epidemic

(2011) Andrew J. Leigh Brown et al.   JOURNAL OF INFECTIOUS DISEASES

Transmission Clustering Drives the Onward Spread of the HIV Epidemic Among Men Who Have Sex With Men in Quebec

(2011) Bluma G. Brenner et al.   JOURNAL OF INFECTIOUS DISEASES

The Role of Migration and Domestic Transmission in the Spread of HIV-1 Non-B Subtypes in Switzerland

(2011) Viktor von Wyl et al.   JOURNAL OF INFECTIOUS DISEASES

Epidemiology of non-B clade forms of HIV-1 in men who have sex with men in the UK

(2010) Julie Fox et al.   AIDS

Longitudinal Phylogenetic Surveillance Identifies Distinct Patterns of Cluster Dynamics

(2010) Manon Ragonnet-Cronin et al.   JAIDS-JOURNAL OF ACQUIRED IMMUNE DEFICIENCY SYNDROMES

Phylogenetic Approach Reveals That Virus Genotype Largely Determines HIV Set-Point Viral Load

(2010) Samuel Alizon et al.   PLoS Pathogens

Molecular Phylodynamics of the Heterosexual HIV Epidemic in the United Kingdom

(2009) Gareth J. Hughes et al.   PLoS Pathogens

Episodic Sexual Transmission of HIV Revealed by Molecular Phylodynamics

(2008) Fraser Lewis et al.   PLOS MEDICINE