Statistical investigation of surface bound ions and further development of BION server to include pH and salt dependence

Chronic Beryllium Disease: Revealing the Role of Beryllium Ion and Small Peptides Binding to HLA-DP2

(2014) Marharyta Petukh et al.   PLoS One

BION web server: predicting non-specifically bound surface ions

(2013) Marharyta Petukh et al.   BIOINFORMATICS

Predicting Nonspecific Ion Binding Using DelPhi

(2012) Marharyta Petukh et al.   BIOPHYSICAL JOURNAL

Non-specific binding of Na + and Mg 2+ to RNA determined by force spectroscopy methods

(2012) C. V. Bizarro et al.   NUCLEIC ACIDS RESEARCH

PROPKA3: Consistent Treatment of Internal and Surface Residues in Empirical pKaPredictions

(2011) Mats H. M. Olsson et al.   Journal of Chemical Theory and Computation

Physical Basis of Structural and Catalytic Zn-Binding Sites in Proteins

(2008) Yu-ming Lee et al.   JOURNAL OF MOLECULAR BIOLOGY