Biological network analysis: insights into structure and functions

Regulatory interactions for iron homeostasis in Aspergillus fumigatus inferred by a Systems Biology approach

(2012) Jörg Linde et al.   BMC Systems Biology

C-GRAAL: Common-neighbors-based global GRAph ALignment of biological networks

(2012) Vesna Memišević et al.   Integrative Biology

Prediction of Human Disease-Related Gene Clusters by Clustering Analysis

(2012) Peng Gang Sun et al.   International Journal of Biological Sciences

Three-dimensional reconstruction of protein networks provides insight into human genetic disease

(2012) Xiujuan Wang et al.   NATURE BIOTECHNOLOGY

Integrative network alignment reveals large regions of global network similarity in yeast and human

(2011) Oleksii Kuchaiev et al.   BIOINFORMATICS

Prioritizing candidate disease genes by network-based boosting of genome-wide association data

(2011) I. Lee et al.   GENOME RESEARCH

Predicting protein complexes in protein interaction networks using a core-attachment algorithm based on graph communicability

(2011) Xiaoke Ma et al.   INFORMATION SCIENCES

Large-scale automated synthesis of human functional neuroimaging data

(2011) Tal Yarkoni et al.   NATURE METHODS

Identification of core-attachment complexes based on maximal frequent patterns in protein-protein interaction networks

(2011) Liang Yu et al.   PROTEOMICS

A statistical framework for differential network analysis from microarray data

(2010) Ryan Gill et al.   BMC BIOINFORMATICS

Statistical inference of the time-varying structure of gene-regulation networks

(2010) Sophie Lèbre et al.   BMC Systems Biology

Dynamic functional modules in co-expressed protein interaction networks of dilated cardiomyopathy

(2010) Chen-Ching Lin et al.   BMC Systems Biology

Toward the dynamic interactome: it's about time

(2010) T. M. Przytycka et al.   BRIEFINGS IN BIOINFORMATICS

SnapShot: Network Motifs

(2010) Oren Shoval et al.   CELL

Diseases as network perturbations

(2010) Antonio del Sol et al.   CURRENT OPINION IN BIOTECHNOLOGY

Topological network alignment uncovers biological function and phylogeny

(2010) O. Kuchaiev et al.   Journal of the Royal Society Interface

Predicting causal effects in large-scale systems from observational data

(2010) Marloes H Maathuis et al.   NATURE METHODS

Computational solutions to large-scale data management and analysis

(2010) Eric E. Schadt et al.   NATURE REVIEWS GENETICS

Dynamic Networks from Hierarchical Bayesian Graph Clustering

(2010) Yongjin Park et al.   PLoS One

Community Landscapes: An Integrative Approach to Determine Overlapping Network Module Hierarchy, Identify Key Nodes and Predict Network Dynamics

(2010) István A. Kovács et al.   PLoS One

An Integrative -omics Approach to Identify Functional Sub-Networks in Human Colorectal Cancer

(2010) Rod K. Nibbe et al.   PLoS Computational Biology

Structure similarity measure with penalty for close non-equivalent residues

(2009) R. I. Sadreyev et al.   BIOINFORMATICS

IsoRankN: spectral methods for global alignment of multiple protein networks

(2009) C.-S. Liao et al.   BIOINFORMATICS

Cancer metastasis networks and the prediction of progression patterns

(2009) L L Chen et al.   BRITISH JOURNAL OF CANCER

Dynamic modularity in protein interaction networks predicts breast cancer outcome

(2009) Ian W Taylor et al.   NATURE BIOTECHNOLOGY

A network view of disease and compound screening

(2009) Eric E. Schadt et al.   NATURE REVIEWS DRUG DISCOVERY

Understanding Modularity in Molecular Networks Requires Dynamics

(2009) R. P. Alexander et al.   Science Signaling

A Dynamic Network Approach for the Study of Human Phenotypes

(2009) César A. Hidalgo et al.   PLoS Computational Biology

Walking the Interactome for Prioritization of Candidate Disease Genes

(2008) Sebastian Köhler et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Align human interactome with phenome to identify causative genes and networks underlying disease families

(2008) Xuebing Wu et al.   BIOINFORMATICS

Dynamical pathway analysis

(2008) Hao Xiong et al.   BMC Systems Biology

Getting Up Close and Personal with Your Genome

(2008) Laura Bonetta   CELL

Gene module level analysis: identification to networks and dynamics

(2008) Xuewei Wang et al.   CURRENT OPINION IN BIOTECHNOLOGY

Network-based global inference of human disease genes

(2008) Xuebing Wu et al.   Molecular Systems Biology

Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network

(2008) Gal Chechik et al.   NATURE BIOTECHNOLOGY

Modeling Cancer Progression via Pathway Dependencies

(2008) Elena J. Edelman et al.   PLoS Computational Biology