Investigating biocomplexity through the agent-based paradigm

A Multi-Paradigm Modeling Framework to Simulate Dynamic Reciprocity in a Bioreactor

(2013) Himanshu Kaul et al.   PLoS One

Hybrid Equation/Agent-Based Model of Ischemia-Induced Hyperemia and Pressure Ulcer Formation Predicts Greater Propensity to Ulcerate in Subjects with Spinal Cord Injury

(2013) Alexey Solovyev et al.   PLoS Computational Biology

Use of agent-based modelling to predict benefits of cleaner fish in controlling sea lice,Lepeophtheirus salmonis, infestations on farmed Atlantic salmon,Salmo salarL.

(2012) M L Groner et al.   JOURNAL OF FISH DISEASES

Cells as state machines: Cell behavior patterns arise during capillary formation as a function of BDNF and VEGF

(2012) Byron L. Long et al.   JOURNAL OF THEORETICAL BIOLOGY

Agent-based economic models and econometrics

(2012) Shu-Heng Chen et al.   KNOWLEDGE ENGINEERING REVIEW

THE WOLFRAM MACHINE

(2011) LUIGI FORTUNA et al.   INTERNATIONAL JOURNAL OF BIFURCATION AND CHAOS

An Agent-Based Model for the Investigation of Neovascularization Within Porous Scaffolds

(2011) Arsun Artel et al.   TISSUE ENGINEERING PART A

Toward a Multi-Scale Computational Model of Arterial Adaptation in Hypertension: Verification of a Multi-Cell Agent Based Model

(2011) Bryan C. Thorne et al.   Frontiers in Physiology

Computational discrete models of tissue growth and regeneration

(2010) F. Azuaje   BRIEFINGS IN BIOINFORMATICS

High performance cellular level agent-based simulation with FLAME for the GPU

(2010) P. Richmond et al.   BRIEFINGS IN BIOINFORMATICS

Engineering hydrogels as extracellular matrix mimics

(2010) Hikmet Geckil et al.   Nanomedicine

Development of a Three Dimensional Multiscale Computational Model of the Human Epidermis

(2010) Salem Adra et al.   PLoS One

Emergence as a computability-theoretic phenomenon

(2009) S. Barry Cooper   APPLIED MATHEMATICS AND COMPUTATION

Hybrid cellular automaton modeling of nutrient modulated cell growth in tissue engineering constructs

(2009) C.A. Chung et al.   JOURNAL OF THEORETICAL BIOLOGY

Exploring Hypotheses of the Actions of TGF-β1 in Epidermal Wound Healing Using a 3D Computational Multiscale Model of the Human Epidermis

(2009) Tao Sun et al.   PLoS One

Development of a two-dimensional agent-based model for chronic chagasic cardiomyopathy after stem cell transplantation

(2008) Viviane Galvão et al.   BIOINFORMATICS

Computational intelligence approaches for pattern discovery in biological systems

(2008) G. B. Fogel   BRIEFINGS IN BIOINFORMATICS

Differentiation of Embryonic Stem Cells to Clinically Relevant Populations: Lessons from Embryonic Development

(2008) Charles E. Murry et al.   CELL

Engineered Microenvironments for Controlled Stem Cell Differentiation

(2008) Jason A. Burdick et al.   TISSUE ENGINEERING PART A

Mining bioprocess data: opportunities and challenges

(2008) Salim Charaniya et al.   TRENDS IN BIOTECHNOLOGY

Characterizing emergent properties of immunological systems with multi-cellular rule-based computational modeling

(2008) Arvind K. Chavali et al.   TRENDS IN IMMUNOLOGY

Enhanced cardiomyogenesis of human embryonic stem cells by a small molecular inhibitor of p38 MAPK

(2007) Ralph Graichen et al.   DIFFERENTIATION

A comparison of random vs. chemotaxis-driven contacts of T cells with dendritic cells during repertoire scanning

(2007) Thomas Riggs et al.   JOURNAL OF THEORETICAL BIOLOGY