The what, where, how and why of gene ontology--a primer for bioinformaticians

Automatic, context-specific generation of Gene Ontology slims

(2010) Melissa J Davis et al.   BMC BIOINFORMATICS

Ontology engineering

(2010) Gil Alterovitz et al.   NATURE BIOTECHNOLOGY

Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression

(2009) Stefanie De Bodt et al.   BMC GENOMICS

Protein-protein interaction as a predictor of subcellular location

(2009) Chang Jin Shin et al.   BMC Systems Biology

Finding disease-specific coordinated functions by multi-function genes: Insight into the coordination mechanisms in diseases

(2009) Wencai Ma et al.   GENOMICS

The Gene Ontology in 2010: extensions and refinements

(2009)   NUCLEIC ACIDS RESEARCH

Protein function prediction – the power of multiplicity

(2009) Robert Rentzsch et al.   TRENDS IN BIOTECHNOLOGY

Understanding animal viruses using the Gene Ontology

(2009) Fiona M. McCarthy et al.   TRENDS IN MICROBIOLOGY

What we can learn about Escherichia coli through application of Gene Ontology

(2009) James C. Hu et al.   TRENDS IN MICROBIOLOGY

Gene Ontology for type III effectors: capturing processes at the host-pathogen interface

(2009) Magdalen Lindeberg et al.   TRENDS IN MICROBIOLOGY

Gene Ontology and the annotation of pathogen genomes: the case of Candida albicans

(2009) Martha B. Arnaud et al.   TRENDS IN MICROBIOLOGY

Linking Human Diseases to Animal Models Using Ontology-Based Phenotype Annotation

(2009) Nicole L. Washington et al.   PLOS BIOLOGY

Semantic Similarity in Biomedical Ontologies

(2009) Catia Pesquita et al.   PLoS Computational Biology

Annotation Error in Public Databases: Misannotation of Molecular Function in Enzyme Superfamilies

(2009) Alexandra M. Schnoes et al.   PLoS Computational Biology

The Gene Ontology's Reference Genome Project: A Unified Framework for Functional Annotation across Species

(2009)   PLoS Computational Biology

Sequence-based feature prediction and annotation of proteins

(2009) Agnieszka S Juncker et al.   GENOME BIOLOGY

Improvements to cardiovascular Gene Ontology

(2008) Ruth C. Lovering et al.   ATHEROSCLEROSIS

Functional coherence in domain interaction networks

(2008) J. Pandey et al.   BIOINFORMATICS

AmiGO: online access to ontology and annotation data

(2008) Seth Carbon et al.   BIOINFORMATICS

Gene Ontology term overlap as a measure of gene functional similarity

(2008) Meeta Mistry et al.   BMC BIOINFORMATICS

Access to immunology through the Gene Ontology

(2008) Ruth C. Lovering et al.   IMMUNOLOGY

Use and misuse of the gene ontology annotations

(2008) Seung Yon Rhee et al.   NATURE REVIEWS GENETICS

FFPred: an integrated feature-based function prediction server for vertebrate proteomes

(2008) A. E. Lobley et al.   NUCLEIC ACIDS RESEARCH

The GOA database in 2009--an integrated Gene Ontology Annotation resource

(2008) D. Barrell et al.   NUCLEIC ACIDS RESEARCH

InterPro: the integrative protein signature database

(2008) S. Hunter et al.   NUCLEIC ACIDS RESEARCH