Next generation sequencing in functional genomics

Genomic imprinting—an epigenetic gene-regulatory model

(2010) Martha V Koerner et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Hormonal Regulation of Acetyl-CoA Carboxylase Isoenzyme Gene Transcription

(2010) Li Feng ZHAO et al.   ENDOCRINE JOURNAL

Global approaches to study protein–protein interactions among viruses and hosts

(2010) Jorge Mendez-Rios et al.   Future Microbiology

Accurate detection and genotyping of SNPs utilizing population sequencing data

(2010) V. Bansal et al.   GENOME RESEARCH

The PI3K/Akt pathway inhibits influenza A virus-induced Bax-mediated apoptosis by negatively regulating the JNK pathway via ASK1

(2010) X. Lu et al.   JOURNAL OF GENERAL VIROLOGY

Genetic inactivation of AKT1, AKT2, and PDPK1 in human colorectal cancer cells clarifies their roles in tumor growth regulation

(2010) K. Ericson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A practical comparison of methods for detecting transcription factor binding sites in ChIP-seq experiments

(2009) Teemu D Laajala et al.   BMC GENOMICS

Computational methods for the detection of cis-regulatory modules

(2009) P. Van Loo et al.   BRIEFINGS IN BIOINFORMATICS

Targeting the RET Pathway in Thyroid Cancer

(2009) S. A. Wells et al.   CLINICAL CANCER RESEARCH

P53 Family: At the Crossroads in Cancer Therapy

(2009) S. Alsafadi et al.   CURRENT MEDICINAL CHEMISTRY

Virus–host interactions: from systems biology to translational research

(2009) Xinxia Peng et al.   CURRENT OPINION IN MICROBIOLOGY

Novel clinico–genome network modeling for revolutionizing genotype–phenotype-based personalized cancer care

(2009) Dimitrios H Roukos   EXPERT REVIEW OF MOLECULAR DIAGNOSTICS

Reverse engineering and verification of gene networks: Principles, assumptions, and limitations of present methods and future perspectives

(2009) Feng He et al.   JOURNAL OF BIOTECHNOLOGY

Computation for ChIP-seq and RNA-seq studies

(2009) Shirley Pepke et al.   NATURE METHODS

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Massively parallel pyrosequencing highlights minority variants in the HIV-1 env quasispecies deriving from lymphomonocyte sub-populations

(2009) Gabriella Rozera et al.   Retrovirology

Differential binding and co-binding pattern of FOXA1 and FOXA3 and their relation to H3K4me3 in HepG2 cells revealed by ChIP-seq

(2009) Mehdi Motallebipour et al.   GENOME BIOLOGY

Bioinformatics applications for pathway analysis of microarray data

(2008) Thomas Werner   CURRENT OPINION IN BIOTECHNOLOGY

Human uniqueness: genome interactions with environment, behaviour and culture

(2008) Ajit Varki et al.   NATURE REVIEWS GENETICS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Core Signaling Pathways in Human Pancreatic Cancers Revealed by Global Genomic Analyses

(2008) S. Jones et al.   SCIENCE

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY