The molecular and mathematical basis of Waddington's epigenetic landscape: A framework for post-Darwinian biology?

On the border of the homeotic function: Re-evaluating the controversial role of cofactor-recruiting motifs

(2011) Samir Merabet et al.   BIOESSAYS

Chromatin higher-order structures and gene regulation

(2011) Guohong Li et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Medusa structure of the gene regulatory network: dominance of transcription factors in cancer subtype classification

(2011) Yuchun Guo et al.   EXPERIMENTAL BIOLOGY AND MEDICINE

Systems biology of stem cells: three useful perspectives to help overcome the paradigm of linear pathways

(2011) S. Huang   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A systems biology view of evolutionary genetics

(2010) Jonathan Bard   BIOESSAYS

The Potential Landscape of Genetic Circuits Imposes the Arrow of Time in Stem Cell Differentiation

(2010) Jin Wang et al.   BIOPHYSICAL JOURNAL

The Language of Histone Crosstalk

(2010) Jung-Shin Lee et al.   CELL

Do chromatin loops provide epigenetic gene expression states?

(2010) Wulan Deng et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Spatial epigenetics: linking nuclear structure and function in higher eukaryotes

(2010) Dean A. Jackson   Essays in Biochemistry

Functional roles for noise in genetic circuits

(2010) Avigdor Eldar et al.   NATURE

Genotype-phenotype mapping and the end of the 'genes as blueprint' metaphor

(2010) M. Pigliucci   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Understanding gene circuits at cell-fate branch points for rational cell reprogramming

(2010) Joseph X. Zhou et al.   TRENDS IN GENETICS

An Extended Synthesis for Evolutionary Biology

(2009) Massimo Pigliucci   Annals of the New York Academy of Sciences

Reprogramming cell fates: reconciling rarity with robustness

(2009) Sui Huang   BIOESSAYS

Non-genetic heterogeneity of cells in development: more than just noise

(2009) S. Huang   DEVELOPMENT

Systems-level dynamic analyses of fate change in murine embryonic stem cells

(2009) Rong Lu et al.   NATURE

Cancer attractors: A systems view of tumors from a gene network dynamics and developmental perspective

(2009) Sui Huang et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

The evolutionary dynamics of evolvability in a gene network model

(2008) J. DRAGHI et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Transcriptome-wide noise controls lineage choice in mammalian progenitor cells

(2008) Hannah H. Chang et al.   NATURE

Neutralism and selectionism: a network-based reconciliation

(2008) Andreas Wagner   NATURE REVIEWS GENETICS

Genes and causation

(2008) D. Noble   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES