NaviCell: a web-based environment for navigation, curation and maintenance of large molecular interaction maps

BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways using standard systems biology formats

(2013) Eric Bonnet et al.   BMC Systems Biology

A travel guide to Cytoscape plugins

(2012) Rintaro Saito et al.   NATURE METHODS

Web-Based Metabolic Network Visualization with a Zooming User Interface

(2011) Mario Latendresse et al.   BMC BIOINFORMATICS

Critical assessment of human metabolic pathway databases: a stepping stone for future integration

(2011) Miranda D Stobbe et al.   BMC Systems Biology

Social engineering for virtual 'big science' in systems biology

(2011) Hiroaki Kitano et al.   Nature Chemical Biology

Identifiers.org and MIRIAM Registry: community resources to provide persistent identification

(2011) N. Juty et al.   NUCLEIC ACIDS RESEARCH

Editing, validating and translating of SBGN maps

(2010) T. Czauderna et al.   BIOINFORMATICS

CellPublisher: a web platform for the intuitive visualization and sharing of metabolic, signalling and regulatory pathways: Fig. 1.

(2010) Lope A. Flórez et al.   BIOINFORMATICS

Payao: a community platform for SBML pathway model curation

(2010) Y. Matsuoka et al.   BIOINFORMATICS

Connecting the dots: role of standardization and technology sharing in biological simulation

(2010) Samik Ghosh et al.   DRUG DISCOVERY TODAY

The BioPAX community standard for pathway data sharing

(2010) Emek Demir et al.   NATURE BIOTECHNOLOGY

PathBuilder—open source software for annotating and developing pathway resources

(2009) Kumaran Kandasamy et al.   BIOINFORMATICS

The Systems Biology Graphical Notation

(2009) Nicolas Le Novère et al.   NATURE BIOTECHNOLOGY

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

(2009) Ron Caspi et al.   NUCLEIC ACIDS RESEARCH

Pathway Projector: Web-Based Zoomable Pathway Browser Using KEGG Atlas and Google Maps API

(2009) Nobuaki Kono et al.   PLoS One

SPIKE – a database, visualization and analysis tool of cellular signaling pathways

(2008) Ran Elkon et al.   BMC BIOINFORMATICS

Presenting and exploring biological pathways with PathVisio

(2008) Martijn P van Iersel et al.   BMC BIOINFORMATICS

WikiPathways: Pathway Editing for the People

(2008) Alexander R Pico et al.   PLOS BIOLOGY