BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways using standard systems biology formats

ModuLand plug-in for Cytoscape: determination of hierarchical layers of overlapping network modules and community centrality

(2012) Máté Szalay-Bekő et al.   BIOINFORMATICS

CySBML: a Cytoscape plugin for SBML

(2012) M. Konig et al.   BIOINFORMATICS

BioPAX support in CellDesigner

(2011) Huaiyu Mi et al.   BIOINFORMATICS

GLay: community structure analysis of biological networks

(2010) G. Su et al.   BIOINFORMATICS

NeMo: Network Module identification in Cytoscape

(2010) Corban G Rivera et al.   BMC BIOINFORMATICS

The BioPAX community standard for pathway data sharing

(2010) Emek Demir et al.   NATURE BIOTECHNOLOGY

Visualization of omics data for systems biology

(2010) Nils Gehlenborg et al.   NATURE METHODS

The Systems Biology Graphical Notation

(2009) Nicolas Le Novère et al.   NATURE BIOTECHNOLOGY

The public road to high-quality curated biological pathways

(2008) M ADRIAENS et al.   DRUG DISCOVERY TODAY

Modelling and analysis of gene regulatory networks

(2008) Guy Karlebach et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY