Dynamic protein interaction modules in human hepatocellular carcinoma progression

ToP: A Trend-of-Disease-Progression Procedure Works Well for Identifying Cancer Genes from Multi-State Cohort Gene Expression Data for Human Colorectal Cancer

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Protein-protein interaction networks: unraveling the wiring of molecular machines within the cell

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Role of cellular senescence in hepatic wound healing and carcinogenesis

(2012) Gayatri Ramakrishna et al.   EUROPEAN JOURNAL OF CELL BIOLOGY

Systematic identification of common functional modules related to heart failure with different etiologies

(2012) Yun Xiao et al.   GENE

Studying the differential co-expression of microRNAs reveals significant role of white matter in early Alzheimer's progression

(2012) Malay Bhattacharyya et al.   Molecular BioSystems

Integrated analysis of somatic mutations and focal copy-number changes identifies key genes and pathways in hepatocellular carcinoma

(2012) Cécile Guichard et al.   NATURE GENETICS

Antiplatelet therapy prevents hepatocellular carcinoma and improves survival in a mouse model of chronic hepatitis B

(2012) G. Sitia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Link-based quantitative methods to identify differentially coexpressed genes and gene Pairs

(2011) Hui Yu et al.   BMC BIOINFORMATICS

Integrative network analysis identifies key genes and pathways in the progression of hepatitis C virus induced hepatocellular carcinoma

(2011) Siyuan Zheng et al.   BMC Medical Genomics

Genome-wide copy number analyses identified novel cancer genes in hepatocellular carcinoma

(2011) Deshui Jia et al.   HEPATOLOGY

Combined gene expression and protein interaction analysis of dynamic modularity in glioma prognosis

(2011) Xiaoyu Zhang et al.   JOURNAL OF NEURO-ONCOLOGY

PINA v2.0: mining interactome modules

(2011) Mark J. Cowley et al.   NUCLEIC ACIDS RESEARCH

Identification of responsive gene modules by network-based gene clustering and extending: application to inflammation and angiogenesis

(2010) Jin Gu et al.   BMC Systems Biology

Dynamic functional modules in co-expressed protein interaction networks of dilated cardiomyopathy

(2010) Chen-Ching Lin et al.   BMC Systems Biology

Toward the dynamic interactome: it's about time

(2010) T. M. Przytycka et al.   BRIEFINGS IN BIOINFORMATICS

Network Analysis of EtOH-Related Candidate Genes

(2010) An-Yuan Guo et al.   CHEMISTRY & BIODIVERSITY

Functional Features, Biological Pathways, and Protein Interaction Networks of Addiction-Related Genes

(2010) Jingchun Sun et al.   CHEMISTRY & BIODIVERSITY

From ‘differential expression’ to ‘differential networking’ – identification of dysfunctional regulatory networks in diseases

(2010) Alberto de la Fuente   TRENDS IN GENETICS

Statistical methods for gene set co-expression analysis

(2009) YounJeong Choi et al.   BIOINFORMATICS

Transcriptional analysis of doxorubicin-induced cytotoxicity and resistance in human hepatocellular carcinoma cell lines

(2009) Jin Wang et al.   LIVER INTERNATIONAL

Dynamic modularity in protein interaction networks predicts breast cancer outcome

(2009) Ian W Taylor et al.   NATURE BIOTECHNOLOGY

Combinatorial network of primary and secondary microRNA-driven regulatory mechanisms

(2009) Kang Tu et al.   NUCLEIC ACIDS RESEARCH

The Effect ofScutellaria Baicalensison the Signaling Network in Hepatocellular Carcinoma Cells

(2009) Fei Ye et al.   NUTRITION AND CANCER-AN INTERNATIONAL JOURNAL

Identifying functional modules in protein-protein interaction networks: an integrated exact approach

(2008) M. T. Dittrich et al.   BIOINFORMATICS

Integrated network analysis platform for protein-protein interactions

(2008) Jianmin Wu et al.   NATURE METHODS