Link-based quantitative methods to identify differentially coexpressed genes and gene Pairs

DCGL: an R package for identifying differentially coexpressed genes and links from gene expression microarray data

(2010) Bao-Hong Liu et al.   BIOINFORMATICS

From ‘differential expression’ to ‘differential networking’ – identification of dysfunctional regulatory networks in diseases

(2010) Alberto de la Fuente   TRENDS IN GENETICS

Statistical methods for gene set co-expression analysis

(2009) YounJeong Choi et al.   BIOINFORMATICS

Identifying set-wise differential co-expression in gene expression microarray data

(2009) Sung Cho et al.   BMC BIOINFORMATICS

Dissecting the dynamics of dysregulation of cellular processes in mouse mammary gland tumor

(2009) Wieslawa I Mentzen et al.   BMC GENOMICS

Signed weighted gene co-expression network analysis of transcriptional regulation in murine embryonic stem cells

(2009) Mike J Mason et al.   BMC GENOMICS

Role for Kruppel-Like Factor 4 in Determining the Outcome of p53 Response to DNA Damage

(2009) Q. Zhou et al.   CANCER RESEARCH

DBH2H: vertebrate head-to-head gene pairs annotated at genomic and post-genomic levels

(2009) Hui Yu et al.   Database-The Journal of Biological Databases and Curation

A Differential Wiring Analysis of Expression Data Correctly Identifies the Gene Containing the Causal Mutation

(2009) Nicholas J. Hudson et al.   PLoS Computational Biology

Aging Mice Show a Decreasing Correlation of Gene Expression within Genetic Modules

(2009) Lucinda K. Southworth et al.   PLoS Genetics

Differential dependency network analysis to identify condition-specific topological changes in biological networks

(2008) Bai Zhang et al.   BIOINFORMATICS

Association Testing of Novel Type 2 Diabetes Risk Alleles in the JAZF1, CDC123/CAMK1D, TSPAN8, THADA, ADAMTS9, and NOTCH2 Loci With Insulin Release, Insulin Sensitivity, and Obesity in a Population-Based Sample of 4,516 Glucose-Tolerant Middle-Aged Danes

(2008) N. Grarup et al.   DIABETES

TGF-β-induced Foxp3 inhibits TH17 cell differentiation by antagonizing RORγt function

(2008) Liang Zhou et al.   NATURE

Adaptations to Climate in Candidate Genes for Common Metabolic Disorders

(2008) Angela M. Hancock et al.   PLoS Genetics

Type 2 diabetes: new genes, new understanding

(2008) Inga Prokopenko et al.   TRENDS IN GENETICS