Yeast 5 – an expanded reconstruction of the Saccharomyces cerevisiae metabolic network

Stoichiometric network reconstruction and analysis of yeast sphingolipid metabolism incorporating different states of hydroxylation

(2011) Fatma Betul Kavun Ozbayraktar et al.   BIOSYSTEMS

A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2

(2011) Ines Thiele et al.   BMC Systems Biology

The human metabolic reconstruction Recon 1 directs hypotheses of novel human metabolic functions

(2011) Ottar Rolfsson et al.   BMC Systems Biology

Applications and trends in systems biology in biochemistry

(2011) Katrin Hübner et al.   FEBS Journal

Social engineering for virtual 'big science' in systems biology

(2011) Hiroaki Kitano et al.   Nature Chemical Biology

An integrated approach to characterize genetic interaction networks in yeast metabolism

(2011) Balázs Szappanos et al.   NATURE GENETICS

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

(2011) Jan Schellenberger et al.   Nature Protocols

Epistatic Interaction Maps Relative to Multiple Metabolic Phenotypes

(2011) Evan S. Snitkin et al.   PLoS Genetics

Further developments towards a genome-scale metabolic model of yeast

(2010) Paul D Dobson et al.   BMC Systems Biology

Genome-wide screen for inositol auxotrophy in Saccharomyces cerevisiae implicates lipid metabolism in stress response signaling

(2010) Manuel J. Villa-García et al.   MOLECULAR GENETICS AND GENOMICS

Prevalent positive epistasis in Escherichia coli and Saccharomyces cerevisiae metabolic networks

(2010) Xionglei He et al.   NATURE GENETICS

Reconstruction and Validation of RefRec: A Global Model for the Yeast Molecular Interaction Network

(2010) Tommi Aho et al.   PLoS One

Mathematical models of cell factories: moving towards the core of industrial biotechnology

(2010) Marija Cvijovic et al.   Microbial Biotechnology

Connecting extracellular metabolomic measurements to intracellular flux states in yeast

(2009) Monica L Mo et al.   BMC Systems Biology

Flux balance analysis: A geometric perspective

(2009) Kieran Smallbone et al.   JOURNAL OF THEORETICAL BIOLOGY

Saccharomyces Genome Database provides mutant phenotype data

(2009) S. R. Engel et al.   NUCLEIC ACIDS RESEARCH

KEGG for representation and analysis of molecular networks involving diseases and drugs

(2009) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Global analysis of the yeast lipidome by quantitative shotgun mass spectrometry

(2009) C. S. Ejsing et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The genome-scale metabolic model iIN800 of Saccharomyces cerevisiae and its validation: a scaffold to query lipid metabolism

(2008) Intawat Nookaew et al.   BMC Systems Biology

Quantitative modeling of triacylglycerol homeostasis in yeast - metabolic requirement for lipolysis to promote membrane lipid synthesis and cellular growth

(2008) Jürgen Zanghellini et al.   FEBS Journal

A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

(2008) Markus J Herrgård et al.   NATURE BIOTECHNOLOGY

Model-driven analysis of experimentally determined growth phenotypes for 465 yeast gene deletion mutants under 16 different conditions

(2008) Evan S Snitkin et al.   GENOME BIOLOGY