The human metabolic reconstruction Recon 1 directs hypotheses of novel human metabolic functions

von Bertalanffy 1.0: a COBRA toolbox extension to thermodynamically constrain metabolic models

(2010) R. M. T. Fleming et al.   BIOINFORMATICS

Systematizing the generation of missing metabolic knowledge

(2010) Jeffrey D. Orth et al.   BIOTECHNOLOGY AND BIOENGINEERING

BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions

(2010) Jan Schellenberger et al.   BMC BIOINFORMATICS

A detailed genome-wide reconstruction of mouse metabolism based on human Recon 1

(2010) Martin I Sigurdsson et al.   BMC Systems Biology

Curating the innate immunity interactome

(2010) David J Lynn et al.   BMC Systems Biology

Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana

(2010) Insuk Lee et al.   NATURE BIOTECHNOLOGY

High-throughput generation, optimization and analysis of genome-scale metabolic models

(2010) Christopher S Henry et al.   NATURE BIOTECHNOLOGY

What is flux balance analysis?

(2010) Jeffrey D Orth et al.   NATURE BIOTECHNOLOGY

Characterization and Comparison of the Tissue-Related Modules in Human and Mouse

(2010) Ruolin Yang et al.   PLoS One

Drug Off-Target Effects Predicted Using Structural Analysis in the Context of a Metabolic Network Model

(2010) Roger L. Chang et al.   PLoS Computational Biology

Metabolic Network Topology Reveals Transcriptional Regulatory Signatures of Type 2 Diabetes

(2010) Aleksej Zelezniak et al.   PLoS Computational Biology

Reconstruction of metabolic pathways for the cattle genome

(2009) Seongwon Seo et al.   BMC Systems Biology

Metabolic network analysis integrated with transcript verification for sequenced genomes

(2009) Ani Manichaikul et al.   NATURE METHODS

GrowMatch: An Automated Method for Reconciling In Silico/In Vivo Growth Predictions

(2009) Vinay Satish Kumar et al.   PLoS Computational Biology

Network-based prediction of human tissue-specific metabolism

(2008) Tomer Shlomi et al.   NATURE BIOTECHNOLOGY

STRING 8--a global view on proteins and their functional interactions in 630 organisms

(2008) L. J. Jensen et al.   NUCLEIC ACIDS RESEARCH