RNA-sequencing reveals early, dynamic transcriptome changes in the corollas of pollinated petunias

FastRFunctions for Robust Correlations and Hierarchical Clustering

(2015) Peter Langfelder et al.   Journal of Statistical Software

Transcriptome and gene expression analysis during flower blooming in Rosa chinensis ‘Pallida’

(2014) Huijun Yan et al.   GENE

Autophagy, plant senescence, and nutrient recycling

(2014) L. Avila-Ospina et al.   JOURNAL OF EXPERIMENTAL BOTANY

A Petunia Homeodomain-Leucine Zipper Protein, PhHD-Zip, Plays an Important Role in Flower Senescence

(2014) Xiaoxiao Chang et al.   PLoS One

Transcriptomic Analysis of Flower Development in Wintersweet (Chimonanthus praecox)

(2014) Daofeng Liu et al.   PLoS One

Transcriptomic Analysis of Petunia hybrida in Response to Salt Stress Using High Throughput RNA Sequencing

(2014) Gonzalo H. Villarino et al.   PLoS One

Differential transcriptome analysis of glandular and filamentous trichomes in Artemisia annua

(2013) Sandra SA Soetaert et al.   BMC PLANT BIOLOGY

Pollination induces autophagy in petunia petals via ethylene

(2013) Kenichi Shibuya et al.   JOURNAL OF EXPERIMENTAL BOTANY

Physiological and metabolic consequences of autophagy deficiency for the management of nitrogen and protein resources in Arabidopsis leaves depending on nitrate availability

(2013) Anne Guiboileau et al.   NEW PHYTOLOGIST

Activities at the Universal Protein Resource (UniProt)

(2013)   NUCLEIC ACIDS RESEARCH

Autophagy Contributes to Leaf Starch Degradation

(2013) Y. Wang et al.   PLANT CELL

Construction and de novo characterization of a transcriptome of Chrysanthemum lavandulifolium: analysis of gene expression patterns in floral bud emergence

(2013) Yi Wang et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Transcriptome Changes Associated with Delayed Flower Senescence on Transgenic Petunia by Inducing Expression of etr1-1, a Mutant Ethylene Receptor

(2013) Hong Wang et al.   PLoS One

Layered pattern receptor signaling via ethylene and endogenous elicitor peptides during Arabidopsis immunity to bacterial infection

(2013) N. Tintor et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mineral nutrient remobilization during corolla senescence in ethylene-sensitive and -insensitive flowers

(2013) M. L. Jones   AoB Plants

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Labellum transcriptome reveals alkene biosynthetic genes involved in orchid sexual deception and pollination-induced senescence

(2012) Filipa Monteiro et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

WRKY54 and WRKY70 co-operate as negative regulators of leaf senescence in Arabidopsis thaliana

(2012) Sébastien Besseau et al.   JOURNAL OF EXPERIMENTAL BOTANY

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Autophagy machinery controls nitrogen remobilization at the whole-plant level under both limiting and ample nitrate conditions in Arabidopsis

(2012) Anne Guiboileau et al.   NEW PHYTOLOGIST

Evidence for contribution of autophagy to Rubisco degradation during leaf senescence inArabidopsis thaliana

(2012) YUKI ONO et al.   PLANT CELL AND ENVIRONMENT

Functional Identification and Characterization of the Brassica Napus Transcription Factor Gene BnAP2, the Ortholog of Arabidopsis Thaliana APETALA2

(2012) Xiaohong Yan et al.   PLoS One

Morphological classification of plant cell deaths

(2011) W G van Doorn et al.   CELL DEATH AND DIFFERENTIATION

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Transcriptome and Metabolite Profiling Show That APETALA2a Is a Major Regulator of Tomato Fruit Ripening

(2011) R. Karlova et al.   PLANT CELL

Heterodimers of theArabidopsisTranscription Factors bZIP1 and bZIP53 Reprogram Amino Acid Metabolism during Low Energy Stress

(2011) Katrin Dietrich et al.   PLANT CELL

High-Resolution Temporal Profiling of Transcripts during Arabidopsis Leaf Senescence Reveals a Distinct Chronology of Processes and Regulation

(2011) E. Breeze et al.   PLANT CELL

Convergence and divergence in gene expression profiles induced by leaf senescence and 27 senescence-promoting hormonal, pathological and environmental stress treatments

(2011) YONGFENG GUO et al.   PLANT CELL AND ENVIRONMENT

PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals

(2011) Robert Kofler et al.   PLoS One

Ethylene synthesis in petunia stigma tissues governs the growth of pollen tubes in progamic phase of fertilization

(2011) L. V. Kovaleva et al.   RUSSIAN JOURNAL OF PLANT PHYSIOLOGY

Population-level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon

(2010) Shawn T O'Neil et al.   BMC GENOMICS

Proteomic analysis of pollination-induced corolla senescence in petunia

(2010) Shuangyi Bai et al.   JOURNAL OF EXPERIMENTAL BOTANY

Identification and expression analysis of ERF transcription factor genes in petunia during flower senescence and in response to hormone treatments

(2010) Juanxu Liu et al.   JOURNAL OF EXPERIMENTAL BOTANY

A HECT E3 ubiquitin ligase negatively regulates Arabidopsis leaf senescence through degradation of the transcription factor WRKY53

(2010) Ying Miao et al.   PLANT JOURNAL

The Autophagic Degradation of Chloroplasts via Rubisco-Containing Bodies Is Specifically Linked to Leaf Carbon Status But Not Nitrogen Status in Arabidopsis

(2010) M. Izumi et al.   PLANT PHYSIOLOGY

Direct transcriptional control of the Arabidopsis immune receptor FLS2 by the ethylene-dependent transcription factors EIN3 and EIL1

(2010) F. Boutrot et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pectin dynamic and distribution of exchangeable Ca2+ in Haemanthus albiflos hollow style during pollen–pistil interactions

(2010) Marta Lenartowska et al.   PROTOPLASMA

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Sucrose-mediated translational control

(2009) Maureen Hummel et al.   ANNALS OF BOTANY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Ethylene regulates phosphorus remobilization and expression of a phosphate transporter (PhPT1) during petunia corolla senescence

(2009) Laura J. Chapin et al.   JOURNAL OF EXPERIMENTAL BOTANY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Physiology and molecular biology of petal senescence

(2008) Wouter G. van Doorn et al.   JOURNAL OF EXPERIMENTAL BOTANY

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

STRING 8--a global view on proteins and their functional interactions in 630 organisms

(2008) L. J. Jensen et al.   NUCLEIC ACIDS RESEARCH

A Comparison of Leaf and Petal Senescence in Wallflower Reveals Common and Distinct Patterns of Gene Expression and Physiology

(2008) A. M. Price et al.   PLANT PHYSIOLOGY

Ethylene signaling is required for pollination-accelerated corolla senescence in petunias

(2008) Michelle L. Jones   PLANT SCIENCE

Galactose metabolism in cell walls of opening and senescing petunia petals

(2008) Erin M. O’Donoghue et al.   PLANTA