Over-expression of Arabidopsis AtCHR23 chromatin remodeling ATPase results in increased variability of growth and gene expression

ArabidopsisChromatin Remodeling Factor PICKLE Interacts with Transcription Factor HY5 to Regulate Hypocotyl Cell Elongation

(2013) Yanjun Jing et al.   PLANT CELL

Snf2 Family Gene Distribution in Higher Plant Genomes Reveals DRD1 Expansion and Diversification in the Tomato Genome

(2013) Joachim W. Bargsten et al.   PLoS One

Seed Germination and Vigor

(2012) Loïc Rajjou et al.   Annual Review of Plant Biology

Molecular mechanisms of robustness in plants

(2012) Janne Lempe et al.   CURRENT OPINION IN PLANT BIOLOGY

Gene Overexpression: Uses, Mechanisms, and Interpretation

(2012) G. Prelich   GENETICS

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Photosynthetic sucrose acts as cotyledon-derived long-distance signal to control root growth during early seedling development in Arabidopsis

(2012) S. Kircher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene balance hypothesis: Connecting issues of dosage sensitivity across biological disciplines

(2012) J. A. Birchler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Interplay between gene expression noise and regulatory network architecture

(2012) Guilhem Chalancon et al.   TRENDS IN GENETICS

Single-Cell Analysis in Biotechnology, Systems Biology, and Biocatalysis

(2012) Frederik S.O. Fritzsch et al.   Annual Review of Chemical and Biomolecular Engineering

Epigenetic contribution to stress adaptation in plants

(2011) Marie Mirouze et al.   CURRENT OPINION IN PLANT BIOLOGY

Gene regulatory networks and the role of robustness and stochasticity in the control of gene expression

(2011) L. T. MacNeil et al.   GENOME RESEARCH

CONSTANS and the evolutionary origin of photoperiodic timing of flowering

(2011) F. Valverde   JOURNAL OF EXPERIMENTAL BOTANY

The CHD3 Chromatin Remodeler PICKLE and Polycomb Group Proteins Antagonistically Regulate Meristem Activity in the Arabidopsis Root

(2011) E. Aichinger et al.   PLANT CELL

Impact of gene expression noise on organismal fitness and the efficacy of natural selection

(2011) Z. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The RNA Silencing Enzyme RNA Polymerase V Is Required for Plant Immunity

(2011) Ana López et al.   PLoS Genetics

From RNA-seq reads to differential expression results

(2011) Alicia Oshlack et al.   GENOME BIOLOGY

Analysis of Arabidopsis thaliana root growth kinetics with high temporal and spatial resolution

(2010) Nima Yazdanbakhsh et al.   ANNALS OF BOTANY

Variability in gene expression underlies incomplete penetrance

(2010) Arjun Raj et al.   NATURE

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Separating parental environment from seed size effects on next generation growth and development in Arabidopsis

(2010) ANGELA L. ELWELL et al.   PLANT CELL AND ENVIRONMENT

Genes Confer Similar Robustness to Environmental, Stochastic, and Genetic Perturbations in Yeast

(2010) Ben Lehner   PLoS One

Epigenetic Reprogramming in Plant and Animal Development

(2010) Suhua Feng et al.   SCIENCE

Plant phenotypic plasticity in a changing climate

(2010) A.B. Nicotra et al.   TRENDS IN PLANT SCIENCE

Gene Expression Variability within and between Human Populations and Implications toward Disease Susceptibility

(2010) Jingjing Li et al.   PLoS Computational Biology

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Quantitative epigenetics: DNA sequence variation need not apply

(2009) E. J. Richards   GENES & DEVELOPMENT

Chromatin regulation functions in plant abiotic stress responses

(2009) JONG-MYONG KIM et al.   PLANT CELL AND ENVIRONMENT

Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences

(2008) Arjun Raj et al.   CELL

Epigenetic regulation and the variability of gene expression

(2008) Jung Kyoon Choi et al.   NATURE GENETICS

The Arabidopsis BRAHMA Chromatin-Remodeling ATPase Is Involved in Repression of Seed Maturation Genes in Leaves

(2008) X. Tang et al.   PLANT PHYSIOLOGY

Network Hubs Buffer Environmental Variation in Saccharomyces cerevisiae

(2008) Sasha F Levy et al.   PLOS BIOLOGY

The Chromatin Remodeler SPLAYED Regulates Specific Stress Signaling Pathways

(2008) Justin W. Walley et al.   PLoS Pathogens