A Sorghum bicolor expression atlas reveals dynamic genotype-specific expression profiles for vegetative tissues of grain, sweet and bioenergy sorghums

Genetic variation and expression diversity between grain and sweet sorghum lines

(2013) Shu-Ye Jiang et al.   BMC GENOMICS

Development of an integrated transcript sequence database and a gene expression atlas for gene discovery and analysis in switchgrass (Panicum virgatumL.)

(2013) Ji-Yi Zhang et al.   PLANT JOURNAL

Loss of function of cinnamyl alcohol dehydrogenase 1 leads to unconventional lignin and a temperature-sensitive growth defect in Medicago truncatula

(2013) Q. Zhao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RNA-seq and microarray complement each other in transcriptome profiling

(2012) Sunitha Kogenaru et al.   BMC GENOMICS

Stem sugar accumulation in sweet sorghum – Activity and expression of sucrose metabolizing enzymes and sucrose transporters

(2012) Hilal Ahmad Qazi et al.   JOURNAL OF PLANT PHYSIOLOGY

Transcriptome analysis and gene expression atlas for Panicum hallii var. filipes, a diploid model for biofuel research

(2012) Eli Meyer et al.   PLANT JOURNAL

Brown midrib2 (Bmr2) encodes the major 4-coumarate:coenzyme A ligase involved in lignin biosynthesis in sorghum (Sorghum bicolor (L.) Moench)

(2012) Ana Saballos et al.   PLANT JOURNAL

Functional annotation of the transcriptome of Sorghum bicolor in response to osmotic stress and abscisic acid

(2011) Diana V Dugas et al.   BMC GENOMICS

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

Genome-wide atlas of transcription during maize development

(2011) Rajandeep S. Sekhon et al.   PLANT JOURNAL

Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays

(2010) Ashish Agarwal et al.   BMC GENOMICS

Genomic and small RNA sequencing of Miscanthus × giganteus shows the utility of sorghum as a reference genome sequence for Andropogoneae grasses

(2010) Kankshita Swaminathan et al.   GENOME BIOLOGY

Transcriptome sequencing of the Microarray Quality Control (MAQC) RNA reference samples using next generation sequencing

(2009) Shrinivasrao P Mane et al.   BMC GENOMICS

The Sorghum bicolor genome and the diversification of grasses

(2009) Andrew H. Paterson et al.   NATURE

A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies

(2009) Yuling Jiao et al.   NATURE GENETICS

The bHLH Transcription Factor SPATULA Controls Final Leaf Size in Arabidopsis thaliana

(2009) Yasunori Ichihashi et al.   PLANT AND CELL PHYSIOLOGY

A dynamic gene expression atlas covering the entire life cycle of rice

(2009) Lei Wang et al.   PLANT JOURNAL

Plant MetGenMAP: An Integrative Analysis System for Plant Systems Biology

(2009) J.-G. Joung et al.   PLANT PHYSIOLOGY

VirtualPlant: A Software Platform to Support Systems Biology Research

(2009) M. S. Katari et al.   PLANT PHYSIOLOGY

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

Genevestigator Transcriptome Meta-Analysis and Biomarker Search using Rice and Barley Gene Expression Databases

(2008) Philip Zimmermann et al.   Molecular Plant

Coupling and coordination in gene expression processes: a systems biology view

(2007) Suzanne Komili et al.   NATURE REVIEWS GENETICS