Bacterial endosymbiont Cardinium cSfur genome sequence provides insights for understanding the symbiotic relationship in Sogatella furcifera host

Detecting the Diversity of Mycoplasma and Ureaplasma Endosymbionts Hosted by Trichomonas vaginalis Isolates

(2017) Anastasios Ioannidis et al.   Frontiers in Microbiology

A simple method to control over-alignment in the MAFFT multiple sequence alignment program

(2016) Kazutaka Katoh et al.   BIOINFORMATICS

Basic principles and practice of gastric cancer screening using high-definition white-light gastroscopy: Eyes can only see what the brain knows

(2016) Takuji Gotoda et al.   Digestive Endoscopy

Detection of Low-Level Cardinium and Wolbachia Infections in Culicoides

(2015) Peter T. Mee et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The natural occurrence of secondary bacterial symbionts in aphids

(2015) SHARON E. ZYTYNSKA et al.   ECOLOGICAL ENTOMOLOGY

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Identification of genetic variations associated with epsilon-poly-lysine biosynthesis in Streptomyces albulus ZPM by genome sequencing

(2015) Lin Wang et al.   Scientific Reports

The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)

(2015) Marcel Huntemann et al.   Standards in Genomic Sciences

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Whitebacked planthopper Sogatella furcifera (Horváth) (Homoptera: Delphacidae) resistance in rice variety Sinna Sivappu

(2014) Kandu Ramesh et al.   EUPHYTICA

Worldwide trends in gastric cancer mortality (1980–2011), with predictions to 2015, and incidence by subtype

(2014) Ana Ferro et al.   EUROPEAN JOURNAL OF CANCER

The Genome of Cardinium cBtQ1 Provides Insights into Genome Reduction, Symbiont Motility, and Its Settlement in Bemisia tabaci

(2014) Diego Santos-Garcia et al.   Genome Biology and Evolution

First detection of endosymbiotic bacteria in biting midgesCulicoides pulicarisandCulicoides punctatus, important Palaearctic vectors of bluetongue virus

(2014) S. E. LEWIS et al.   MEDICAL AND VETERINARY ENTOMOLOGY

HER2 therapies and gastric cancer: A step forward

(2014) Ramon Andrade de Mello   WORLD JOURNAL OF GASTROENTEROLOGY

Complete Genomes of Two Dipteran-Associated Spiroplasmas Provided Insights into the Origin, Dynamics, and Impacts of Viral Invasion in Spiroplasma

(2013) Chuan Ku et al.   Genome Biology and Evolution

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Transporter Classification Database

(2013) Milton H. Saier et al.   NUCLEIC ACIDS RESEARCH

Evidence for Horizontal Transmission of Secondary Endosymbionts in the Bemisia tabaci Cryptic Species Complex

(2013) Muhammad Z. Ahmed et al.   PLoS One

Genomic Insights into the Glutathione S-Transferase Gene Family of Two Rice Planthoppers, Nilaparvata lugens (Stål) and Sogatella furcifera (Horváth) (Hemiptera: Delphacidae)

(2013) Wen-Wu Zhou et al.   PLoS One

Highly frequent PIK3CA amplification is associated with poor prognosis in gastric cancer

(2012) Jing Shi et al.   BMC CANCER

Prevalence of the symbiont Cardinium in Culicoides (Diptera: Ceratopogonidae) vector species is associated with land surface temperature

(2012) Neta Morag et al.   FASEB JOURNAL

Various infection status and molecular evidence for horizontal transmission and recombination ofWolbachiaandCardiniumamong rice planthoppers and related species

(2012) Kai-Jun Zhang et al.   Insect Science

Gliding Motility and Por Secretion System Genes Are Widespread among Members of the Phylum Bacteroidetes

(2012) Mark J. McBride et al.   JOURNAL OF BACTERIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

FastUniq: A Fast De Novo Duplicates Removal Tool for Paired Short Reads

(2012) Haibin Xu et al.   PLoS One

Toward almost closed genomes with GapFiller

(2012) Marten Boetzer et al.   GENOME BIOLOGY

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

Differentially expressed genes in silkworm cell cultures in response to infection by Wolbachia and Cardinium endosymbionts

(2011) Y. Nakamura et al.   INSECT MOLECULAR BIOLOGY

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Extreme genome reduction in symbiotic bacteria

(2011) John P. McCutcheon et al.   NATURE REVIEWS MICROBIOLOGY

Data mining using the Catalogue of Somatic Mutations in Cancer BioMart

(2011) R. Shepherd et al.   Database-The Journal of Biological Databases and Curation

ISsaga is an ensemble of web-based methods for high throughput identification and semi-automatic annotation of insertion sequences in prokaryotic genomes

(2011) Alessandro M Varani et al.   GENOME BIOLOGY

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Hidden Markov model speed heuristic and iterative HMM search procedure

(2010) L Steven Johnson et al.   BMC BIOINFORMATICS

Oncogenic mutations in gastric cancer with microsatellite instability

(2010) Giovanni Corso et al.   EUROPEAN JOURNAL OF CANCER

Lipoic Acid Metabolism in Microbial Pathogens

(2010) M. D. Spalding et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Massive comparative genomic analysis reveals convergent evolution of specialized bacteria

(2009) Vicky Merhej et al.   Biology Direct

Bacterial motility complexes require the actin-like protein, MreB and the Ras homologue, MglA

(2009) Emilia M F Mauriello et al.   EMBO JOURNAL

Pervasive associations between Cybaeus spiders and the bacterial symbiont Cardinium

(2009) Steve J. Perlman et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

High incidence of the maternally inherited bacterium Cardinium in spiders

(2008) OLIVIER DURON et al.   MOLECULAR ECOLOGY

Wolbachia and Virus Protection in Insects

(2008) L. M. Hedges et al.   SCIENCE