Analysis of genome sequence and symbiotic ability of rhizobial strains isolated from seeds of common bean (Phaseolus vulgaris)

Symbiotic nitrogen fixation by rhizobia — the roots of a success story

(2018) Catherine Masson-Boivin et al.   CURRENT OPINION IN PLANT BIOLOGY

Gene duplication can impart fragility, not robustness, in the yeast protein interaction network

(2017) Guillaume Diss et al.   SCIENCE

The Evolution of Bacterial Genome Architecture

(2017) Louis-Marie Bobay et al.   Frontiers in Genetics

Parallel genome reduction in symbionts descended from closely related free-living bacteria

(2017) Vittorio Boscaro et al.   Nature Ecology & Evolution

Genomic studies of nitrogen-fixing rhizobial strains from Phaseolus vulgaris seeds and nodules

(2016) Humberto Peralta et al.   BMC GENOMICS

Genetic and life-history traits associated with the distribution of prophages in bacteria

(2016) Marie Touchon et al.   ISME Journal

PHASTER: a better, faster version of the PHAST phage search tool

(2016) David Arndt et al.   NUCLEIC ACIDS RESEARCH

Symbiosis Island Shuffling with Abundant Insertion Sequences in the Genomes of Extra-Slow-Growing Strains of Soybean Bradyrhizobia

(2015) Takayuki Iida et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Distinctive Genome Reduction Rates Revealed by Genomic Analyses of TwoCoxiella-Like Endosymbionts in Ticks

(2015) Yuval Gottlieb et al.   Genome Biology and Evolution

Nitrogen-Fixing Rhizobial Strains Isolated from Common Bean Seeds: Phylogeny, Physiology, and Genome Analysis

(2014) Yolanda Mora et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Whole-genome sequencing of Mesorhizobium huakuii 7653R provides molecular insights into host specificity and symbiosis island dynamics

(2014) Shanming Wang et al.   BMC GENOMICS

Characterization of Rhizobium grahamii extrachromosomal replicons and their transfer among rhizobia

(2014) María Althabegoiti et al.   BMC MICROBIOLOGY

Rhizobium populi sp. nov., an endophytic bacterium isolated from Populus euphratica

(2014) M. Rozahon et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Gene transfer agents: phage-like elements of genetic exchange

(2012) Andrew S. Lang et al.   NATURE REVIEWS MICROBIOLOGY

Changes in the population of seed bacteria of transgenerationally Cd-exposedArabidopsis thaliana

(2012) S. Truyens et al.   PLANT BIOLOGY

Proteinortho: Detection of (Co-)orthologs in large-scale analysis

(2011) Marcus Lechner et al.   BMC BIOINFORMATICS

Plasmids with a Chromosome-Like Role in Rhizobia

(2011) C. Landeta et al.   JOURNAL OF BACTERIOLOGY

Failure to fix nitrogen by non-reproductive symbiotic rhizobia triggers host sanctions that reduce fitness of their reproductive clonemates

(2011) R. Oono et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Conserved Symbiotic Plasmid DNA Sequences in the Multireplicon Pangenomic Structure of Rhizobium etli

(2010) V. Gonzalez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Shifting the genomic gold standard for the prokaryotic species definition

(2009) Michael Richter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of Intracellular Pathogens

(2008) Arturo Casadevall   Annual Review of Microbiology

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH