Whole genome sequencing and function prediction of 133 gut anaerobes isolated from chicken caecum in pure cultures
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Whole genome sequencing and function prediction of 133 gut anaerobes isolated from chicken caecum in pure cultures
Authors
Keywords
Microbiota, Microbiome, Chicken, Whole genome sequencing, Metabolic pathway, Host-microbiota interactions, Anaerobe, Butyrate, Propionate
Journal
BMC GENOMICS
Volume 19, Issue 1, Pages -
Publisher
Springer Nature America, Inc
Online
2018-07-31
DOI
10.1186/s12864-018-4959-4
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Microbiology: the return of culture
- (2017) Vivien Marx NATURE METHODS
- Housing Systems Influence Gut Microbiota Composition of Sows but Not of Their Piglets
- (2017) Tereza Kubasova et al. PLoS One
- Culturing of ‘unculturable’ human microbiota reveals novel taxa and extensive sporulation
- (2016) Hilary P. Browne et al. NATURE
- Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota
- (2016) Stefanía Magnúsdóttir et al. NATURE BIOTECHNOLOGY
- Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
- (2016) Ivica Letunic et al. NUCLEIC ACIDS RESEARCH
- Capturing the diversity of the human gut microbiota through culture-enriched molecular profiling
- (2016) Jennifer T. Lau et al. Genome Medicine
- Phylogenomic analysis supports the ancestral presence of LPS-outer membranes in the Firmicutes
- (2016) Luisa CS Antunes et al. eLife
- Comparative In silico Analysis of Butyrate Production Pathways in Gut Commensals and Pathogens
- (2016) Swadha Anand et al. Frontiers in Microbiology
- Composition of Gut Microbiota Influences Resistance of Newly Hatched Chickens to Salmonella Enteritidis Infection
- (2016) Karolina Varmuzova et al. Frontiers in Microbiology
- Transient and Prolonged Response of Chicken Cecum Mucosa to Colonization with Different Gut Microbiota
- (2016) Jiri Volf et al. PLoS One
- Important Metabolic Pathways and Biological Processes Expressed by Chicken Cecal Microbiota
- (2015) Ondrej Polansky et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Crosstalk between Microbiota-Derived Short-Chain Fatty Acids and Intestinal Epithelial HIF Augments Tissue Barrier Function
- (2015) Caleb J. Kelly et al. Cell Host & Microbe
- Cloacibacillus sp., a Potential Human Pathogen Associated with Bacteremia in Quebec and New Brunswick
- (2015) M.-C. Domingo et al. JOURNAL OF CLINICAL MICROBIOLOGY
- GABA and GABA receptors in the gastrointestinal tract: from motility to inflammation
- (2015) Michelangelo Auteri et al. PHARMACOLOGICAL RESEARCH
- Genetic determinants of in vivo fitness and diet responsiveness in multiple human gut Bacteroides
- (2015) M. Wu et al. SCIENCE
- Fermentable non-starch polysaccharides increases the abundance of Bacteroides–Prevotella–Porphyromonas in ileal microbial community of growing pigs
- (2014) E. Ivarsson et al. Animal
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
- (2014) Pablo Yarza et al. NATURE REVIEWS MICROBIOLOGY
- Extensive Microbial and Functional Diversity within the Chicken Cecal Microbiome
- (2014) Martin J. Sergeant et al. PLoS One
- Succession and Replacement of Bacterial Populations in the Caecum of Egg Laying Hens over Their Whole Life
- (2014) Petra Videnska et al. PLoS One
- Xylan utilization in human gut commensal bacteria is orchestrated by unique modular organization of polysaccharide-degrading enzymes
- (2014) M. Zhang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Revealing the Bacterial Butyrate Synthesis Pathways by Analyzing (Meta)genomic Data
- (2014) M. Vital et al. mBio
- A comprehensive evaluation of assembly scaffolding tools
- (2014) Martin Hunt et al. GENOME BIOLOGY
- QUAST: quality assessment tool for genome assemblies
- (2013) Alexey Gurevich et al. BIOINFORMATICS
- Discovery of β-1,4-d-Mannosyl-N-acetyl-d-glucosamine Phosphorylase Involved in the Metabolism ofN-Glycans
- (2013) Takanori Nihira et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Structural and mechanistic insights into prokaryotic energy-coupling factor transporters
- (2013) Dirk J. Slotboom NATURE REVIEWS MICROBIOLOGY
- The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
- (2013) Ross Overbeek et al. NUCLEIC ACIDS RESEARCH
- Metabolic niche of a prominent sulfate-reducing human gut bacterium
- (2013) F. E. Rey et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
- (2012) Evguenia Kopylova et al. BIOINFORMATICS
- IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
- (2012) Y. Peng et al. BIOINFORMATICS
- Cloacibacillus porcorum sp. nov., a mucin-degrading bacterium from the swine intestinal tract and emended description of the genus Cloacibacillus
- (2012) T. Looft et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Phylotype-level 16S rRNA analysis reveals new bacterial indicators of health state in acute murine colitis
- (2012) David Berry et al. ISME Journal
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Ribosomal multilocus sequence typing: universal characterization of bacteria from domain to strain
- (2012) K. A. Jolley et al. MICROBIOLOGY-SGM
- Contributions of the microbial hydrogen economy to colonic homeostasis
- (2012) Franck Carbonero et al. Nature Reviews Gastroenterology & Hepatology
- Integrated Metagenomics/Metaproteomics Reveals Human Host-Microbiota Signatures of Crohn's Disease
- (2012) Alison R. Erickson et al. PLoS One
- Correlating structure and function during the evolution of fibrinogen-related domains
- (2012) Russell F. Doolittle et al. PROTEIN SCIENCE
- Sulfatases and a RadicalS-Adenosyl-l-methionine (AdoMet) Enzyme Are Key for Mucosal Foraging and Fitness of the Prominent Human Gut Symbiont,Bacteroides thetaiotaomicron
- (2011) Alhosna Benjdia et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Role of fibronectin-binding protein A in Clostridium difficile intestinal colonization
- (2011) A. Barketi-Klai et al. JOURNAL OF MEDICAL MICROBIOLOGY
- Metatranscriptomic Approach to Analyze the Functional Human Gut Microbiota
- (2011) María José Gosalbes et al. PLoS One
- Modulations of the Chicken Cecal Microbiome and Metagenome in Response to Anticoccidial and Growth Promoter Treatment
- (2011) Jessica L. Danzeisen et al. PLoS One
- Intestinal inflammation allows Salmonella to use ethanolamine to compete with the microbiota
- (2011) P. Thiennimitr et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Two novel ficolin-like proteins act as pattern recognition receptors for invading pathogens in the freshwater crayfish Pacifastacus leniusculus
- (2011) Chenglin Wu et al. PROTEOMICS
- Scaffolding pre-assembled contigs using SSPACE
- (2010) Marten Boetzer et al. BIOINFORMATICS
- Endothelin-converting enzyme-1 in Alzheimer's disease and vascular dementia
- (2010) J. C. Palmer et al. NEUROPATHOLOGY AND APPLIED NEUROBIOLOGY
- Caught in a TRAP: substrate-binding proteins in secondary transport
- (2010) Marcus Fischer et al. TRENDS IN MICROBIOLOGY
- The Ultramicrobacterium "Elusimicrobium minutum" gen. nov., sp. nov., the First Cultivated Representative of the Termite Group 1 Phylum
- (2009) O. Geissinger et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Evolution of steroid-5α-reductases and comparison of their function with 5β-reductase
- (2009) Valérie S. Langlois et al. GENERAL AND COMPARATIVE ENDOCRINOLOGY
- Metagenomic analyses reveal antibiotic-induced temporal and spatial changes in intestinal microbiota with associated alterations in immune cell homeostasis
- (2009) D A Hill et al. Mucosal Immunology
- Mucosal Glycan Foraging Enhances Fitness and Transmission of a Saccharolytic Human Gut Bacterial Symbiont
- (2008) Eric C. Martens et al. Cell Host & Microbe
- A Novel Class of Modular Transporters for Vitamins in Prokaryotes
- (2008) D. A. Rodionov et al. JOURNAL OF BACTERIOLOGY
- The rpoB gene as a tool for clinical microbiologists
- (2008) Toïdi Adékambi et al. TRENDS IN MICROBIOLOGY
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now