Integrating cereal genomics to support innovation in the Triticeae

DNA repair and crossing over favor similar chromosome regions as discovered in radiation hybrid of Triticum

(2012) Ajay Kumar et al.   BMC GENOMICS

Whole Genome Profiling provides a robust framework for physical mapping and sequencing in the highly complex and repetitive wheat genome

(2012) Romain Philippe et al.   BMC GENOMICS

New cis-regulatory elements in the Rht-D1b locus region of wheat

(2012) Jialei Duan et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Chromosomes in the flow to simplify genome analysis

(2012) Jaroslav Doležel et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Advances in BAC-Based Physical Mapping and Map Integration Strategies in Plants

(2012) Ruvini Ariyadasa et al.   JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY

A SHORT INTERNODES (SHI) family transcription factor gene regulates awn elongation and pistil morphology in barley

(2012) Takahisa Yuo et al.   JOURNAL OF EXPERIMENTAL BOTANY

A physical, genetic and functional sequence assembly of the barley genome

(2012)   NATURE

Reference genome sequence of the model plant Setaria

(2012) Jeffrey L Bennetzen et al.   NATURE BIOTECHNOLOGY

Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential

(2012) Gengyun Zhang et al.   NATURE BIOTECHNOLOGY

Marker-Assisted Selection for Disease Resistance in Wheat and Barley Breeding

(2012) Thomas Miedaner et al.   PHYTOPATHOLOGY

Targeted re-sequencing of the allohexaploid wheat exome

(2012) Mark O. Winfield et al.   PLANT BIOTECHNOLOGY JOURNAL

A multiparent advanced generation inter-cross population for genetic analysis in wheat

(2012) Bevan E. Huang et al.   PLANT BIOTECHNOLOGY JOURNAL

Divergent functions of orthologous NAC transcription factors in wheat and rice

(2012) Assaf Distelfeld et al.   PLANT MOLECULAR BIOLOGY

Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach

(2012) Jesse A. Poland et al.   PLoS One

Allelic Variations of a Light Harvesting Chlorophyll A/B-Binding Protein Gene (Lhcb1) Associated with Agronomic Traits in Barley

(2012) Yanshi Xia et al.   PLoS One

Analysis of the barley bract suppression gene Trd1

(2012) Kelly Houston et al.   THEORETICAL AND APPLIED GENETICS

Functional markers in wheat: current status and future prospects

(2012) Yanan Liu et al.   THEORETICAL AND APPLIED GENETICS

TriAnnot: A Versatile and High Performance Pipeline for the Automated Annotation of Plant Genomes

(2012) Philippe Leroy et al.   Frontiers in Plant Science

Sequence-based marker development in wheat: Advances and applications to breeding

(2011) Etienne Paux et al.   BIOTECHNOLOGY ADVANCES

Specific patterns of gene space organisation revealed in wheat by using the combination of barley and wheat genomic resources

(2011) Camille Rustenholz et al.   BMC GENOMICS

BAC library resources for map-based cloning and physical map construction in barley (Hordeum vulgare L.)

(2011) Daniela Schulte et al.   BMC GENOMICS

Reconstruction of the Synthetic W7984 × Opata M85 wheat reference population

(2011) Mark E. Sorrells et al.   GENOME

Sequence-based physical mapping of complex genomes by whole genome profiling

(2011) J. van Oeveren et al.   GENOME RESEARCH

Comparative sequence analysis of VRN1 alleles of Lolium perenne with the co-linear regions in barley, wheat, and rice

(2011) Torben Asp et al.   MOLECULAR GENETICS AND GENOMICS

Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS

(2011) Paul J. Berkman et al.   PLANT BIOTECHNOLOGY JOURNAL

Frequent Gene Movement and Pseudogene Evolution Is Common to the Large and Complex Genomes of Wheat, Barley, and Their Relatives

(2011) Thomas Wicker et al.   PLANT CELL

Unlocking the Barley Genome by Chromosomal and Comparative Genomics

(2011) Klaus F.X. Mayer et al.   PLANT CELL

Discovery of Rare Mutations in Populations: TILLING by Sequencing

(2011) H. Tsai et al.   PLANT PHYSIOLOGY

A 3,000-Loci Transcription Map of Chromosome 3B Unravels the Structural and Functional Features of Gene Islands in Hexaploid Wheat

(2011) C. Rustenholz et al.   PLANT PHYSIOLOGY

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Analysis of genetic structure in a panel of elite wheat varieties and relevance for association mapping

(2011) Fabien Le Couviour et al.   THEORETICAL AND APPLIED GENETICS

Sequencing wheat chromosome arm 7BS delimits the 7BS/4AL translocation and reveals homoeologous gene conservation

(2011) Paul J. Berkman et al.   THEORETICAL AND APPLIED GENETICS

An Improved Consensus Linkage Map of Barley Based on Flow-Sorted Chromosomes and Single Nucleotide Polymorphism Markers

(2011) María Muñoz-Amatriaín et al.   Plant Genome

Targeted analysis of nucleotide and copy number variation by exon capture in allotetraploid wheat genome

(2011) Cyrille Saintenac et al.   GENOME BIOLOGY

LTC: a novel algorithm to improve the efficiency of contig assembly for physical mapping in complex genomes

(2010) Zeev Frenkel et al.   BMC BIOINFORMATICS

A highly conserved gene island of three genes on chromosome 3B of hexaploid wheat: diverse gene function and genomic structure maintained in a tightly linked block

(2010) James M Breen et al.   BMC PLANT BIOLOGY

Wheat beta-expansin (EXPB11) genes: Identification of the expressed gene on chromosome 3BS carrying a pollen allergen domain

(2010) James Breen et al.   BMC PLANT BIOLOGY

A Method to Produce Radiation Hybrids for the D-Genome Chromosomes of Wheat (Triticum aestivum L.)

(2010) O. Riera-Lizarazu et al.   CYTOGENETIC AND GENOME RESEARCH

Development of Chromosome-Specific BAC Resources for Genomics of Bread Wheat

(2010) J. Šafář et al.   CYTOGENETIC AND GENOME RESEARCH

Germin-like proteins (GLPs) in cereal genomes: gene clustering and dynamic roles in plant defence

(2010) James Breen et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Genome sequencing and analysis of the model grass Brachypodium distachyon

(2010) John P. Vogel et al.   NATURE

Insertion site-based polymorphism markers open new perspectives for genome saturation and marker-assisted selection in wheat

(2010) Etienne Paux et al.   PLANT BIOTECHNOLOGY JOURNAL

Megabase Level Sequencing Reveals Contrasted Organization and Evolution Patterns of the Wheat Gene and Transposable Element Spaces

(2010) Frédéric Choulet et al.   PLANT CELL

Lr34 multi-pathogen resistance ABC transporter: molecular analysis of homoeologous and orthologous genes in hexaploid wheat and other grass species

(2010) Simon G. Krattinger et al.   PLANT JOURNAL

The CC-NB-LRR-Type Rdg2a Resistance Gene Confers Immunity to the Seed-Borne Barley Leaf Stripe Pathogen in the Absence of Hypersensitive Cell Death

(2010) Davide Bulgarelli et al.   PLoS One

High-Resolution Genotyping via Whole Genome Hybridizations to Microarrays Containing Long Oligonucleotide Probes

(2010) Yan Fu et al.   PLoS One

Genome-wide association mapping to candidate polymorphism resolution in the unsequenced barley genome

(2010) J. Cockram et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A unique wheat disease resistance-like gene governs effector-triggered susceptibility to necrotrophic pathogens

(2010) J. D. Faris et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Association mapping for quality traits in soft winter wheat

(2010) Jochen C. Reif et al.   THEORETICAL AND APPLIED GENETICS

Crop genome sequencing: lessons and rationales

(2010) Catherine Feuillet et al.   TRENDS IN PLANT SCIENCE

Development and implementation of high-throughput SNP genotyping in barley

(2009) Timothy J Close et al.   BMC GENOMICS

Centromeres: long intergenic spaces with adaptive features

(2009) Lisa Kanizay et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Genomics in cereals: from genome-wide conserved orthologous set (COS) sequences to candidate genes for trait dissection

(2009) Umar Masood Quraishi et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Sixty Million Years in Evolution of Soft Grain Trait in Grasses: Emergence of the Softness Locus in the Common Ancestor of Pooideae and Ehrhartoideae, after their Divergence from Panicoideae

(2009) M. Charles et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Sorghum bicolor genome and the diversification of grasses

(2009) Andrew H. Paterson et al.   NATURE

Gene Content and Virtual Gene Order of Barley Chromosome 1H

(2009) K. F.X. Mayer et al.   PLANT PHYSIOLOGY

Reconstruction of monocotelydoneous proto-chromosomes reveals faster evolution in plants than in animals

(2009) J. Salse et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cleistogamous flowering in barley arises from the suppression of microRNA-guided HvAP2 mRNA cleavage

(2009) S. K. Nair et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Kinase-START Gene Confers Temperature-Dependent Resistance to Wheat Stripe Rust

(2009) D. Fu et al.   SCIENCE

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

A tale of two centromeres—diversity of structure but conservation of function in plants and animals

(2008) James A. Birchler et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Detailed Recombination Studies Along Chromosome 3B Provide New Insights on Crossover Distribution in Wheat (Triticum aestivum L.)

(2008) C. Saintenac et al.   GENETICS

Dynamics and Differential Proliferation of Transposable Elements During the Evolution of the B and A Genomes of Wheat

(2008) M. Charles et al.   GENETICS

TILLMore, a resource for the discovery of chemically induced mutants in barley

(2008) Valentina Talamè et al.   PLANT BIOTECHNOLOGY JOURNAL

The stem rust resistance gene Rpg5 encodes a protein with nucleotide-binding-site, leucine-rich, and protein kinase domains

(2008) R. Brueggeman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway

(2008) S. Taketa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Physical Map of the 1-Gigabase Bread Wheat Chromosome 3B

(2008) E. Paux et al.   SCIENCE