Production of a reference transcriptome and transcriptomic database (EdwardsiellaBase) for the lined sea anemone, Edwardsiella lineata, a parasitic cnidarian
Published 2014 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Production of a reference transcriptome and transcriptomic database (EdwardsiellaBase) for the lined sea anemone, Edwardsiella lineata, a parasitic cnidarian
Authors
Keywords
Gene Ontology, Enzyme Commission, Transcriptome Assembly, Enzyme Commission Number, Sock Gene
Journal
BMC GENOMICS
Volume 15, Issue 1, Pages 71
Publisher
Springer Nature
Online
2014-01-28
DOI
10.1186/1471-2164-15-71
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Characterization of differential transcript abundance through time during Nematostella vectensis development
- (2013) Rebecca Helm et al. BMC GENOMICS
- A comparison across non-model animals suggests an optimal sequencing depth for de novo transcriptome assembly
- (2013) Warren R Francis et al. BMC GENOMICS
- The genomes of four tapeworm species reveal adaptations to parasitism
- (2013) Isheng J. Tsai et al. NATURE
- Isolation of DNA, RNA and protein from the starlet sea anemone Nematostella vectensis
- (2013) Derek J Stefanik et al. Nature Protocols
- Collecting, rearing, spawning and inducing regeneration of the starlet sea anemone, Nematostella vectensis
- (2013) Derek J Stefanik et al. Nature Protocols
- Characterizing the spatiotemporal expression of RNAs and proteins in the starlet sea anemone, Nematostella vectensis
- (2013) Francis S Wolenski et al. Nature Protocols
- PhyloBayes MPI: Phylogenetic Reconstruction with Infinite Mixtures of Profiles in a Parallel Environment
- (2013) Nicolas Lartillot et al. SYSTEMATIC BIOLOGY
- Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels
- (2012) Marcel H. Schulz et al. BIOINFORMATICS
- Developing the anemone Aiptasia as a tractable model for cnidarian-dinoflagellate symbiosis: the transcriptome of aposymbiotic A. pallida
- (2012) Erik M Lehnert et al. BMC GENOMICS
- Visualizing next-generation sequencing data with JBrowse
- (2012) O. Westesson et al. BRIEFINGS IN BIOINFORMATICS
- NF-κB is required for cnidocyte development in the sea anemone Nematostella vectensis
- (2012) Francis S. Wolenski et al. DEVELOPMENTAL BIOLOGY
- NF-κB: where did it come from and why?
- (2012) Thomas D. Gilmore et al. IMMUNOLOGICAL REVIEWS
- PcarnBase: Development of a Transcriptomic Database for the Brain Coral Platygyra carnosus
- (2012) Jin Sun et al. MARINE BIOTECHNOLOGY
- Whole Transcriptome Analysis of the CoralAcropora milleporaReveals Complex Responses to CO2-driven Acidification during the Initiation of Calcification
- (2012) A. MOYA et al. MOLECULAR ECOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Deep sequencing reveals unique small RNA repertoire that is regulated during head regeneration in Hydra magnipapillata
- (2012) Srikar Krishna et al. NUCLEIC ACIDS RESEARCH
- Production of a reference transcriptome and transcriptomic database (PocilloporaBase) for the cauliflower coral, Pocillopora damicornis
- (2011) Nikki Traylor-Knowles et al. BMC GENOMICS
- Estimation of divergence times in cnidarian evolution based on mitochondrial protein-coding genes and the fossil record
- (2011) Eunji Park et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Using the Acropora digitifera genome to understand coral responses to environmental change
- (2011) Chuya Shinzato et al. NATURE
- Morphological and Molecular Analysis of the Nematostella vectensis Cnidom
- (2011) Claudia Zenkert et al. PLoS One
- Differential Gene Expression in the Siphonophore Nanomia bijuga (Cnidaria) Assessed with Multiple Next-Generation Sequencing Workflows
- (2011) Stefan Siebert et al. PLoS One
- Gene Discovery in the Threatened Elkhorn Coral: 454 Sequencing of the Acropora palmata Transcriptome
- (2011) Nicholas R. Polato et al. PLoS One
- The Cambrian Conundrum: Early Divergence and Later Ecological Success in the Early History of Animals
- (2011) D. H. Erwin et al. SCIENCE
- Running with the Red Queen: Host-Parasite Coevolution Selects for Biparental Sex
- (2011) L. T. Morran et al. SCIENCE
- Early evolution of the LIM homeobox gene family
- (2010) Mansi Srivastava et al. BMC BIOLOGY
- Characterization of the Core Elements of the NF- B Signaling Pathway of the Sea Anemone Nematostella vectensis
- (2010) F. S. Wolenski et al. MOLECULAR AND CELLULAR BIOLOGY
- Improved Phylogenomic Taxon Sampling Noticeably Affects Nonbilaterian Relationships
- (2010) K. S. Pick et al. MOLECULAR BIOLOGY AND EVOLUTION
- Phylogenetic Relationships among Deep-Sea and Chemosynthetic Sea Anemones: Actinoscyphiidae and Actinostolidae (Actiniaria: Mesomyaria)
- (2010) Estefanía Rodríguez et al. PLoS One
- PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating
- (2009) Nicolas Lartillot et al. BIOINFORMATICS
- Nuclear receptor complement of the cnidarian Nematostella vectensis: phylogenetic relationships and developmental expression patterns
- (2009) Adam M Reitzel et al. BMC EVOLUTIONARY BIOLOGY
- Comprehensive EST analysis of the symbiotic sea anemone, Anemonia viridis
- (2009) Cécile Sabourault et al. BMC GENOMICS
- Generation and analysis of transcriptomic resources for a model system on the rise: the sea anemone Aiptasia pallida and its dinoflagellate endosymbiont
- (2009) Shinichi Sunagawa et al. BMC GENOMICS
- Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx
- (2009) Eli Meyer et al. BMC GENOMICS
- The transcriptome of the colonial marine hydroid Hydractinia echinata
- (2009) Jorge Soza-Ried et al. FEBS Journal
- Where's the glass? Biomarkers, molecular clocks, and microRNAs suggest a 200-Myr missing Precambrian fossil record of siliceous sponge spicules
- (2009) E. A. SPERLING et al. Geobiology
- Comparative Anatomy and Histology of Developmental and Parasitic Stages in the Life Cycle of the Lined Sea Anemone Edwardsiella lineata
- (2009) Adam M. Reitzel et al. JOURNAL OF PARASITOLOGY
- The host transcriptome remains unaltered during the establishment of coral-algal symbioses
- (2009) CHRISTIAN R. VOOLSTRA et al. MOLECULAR ECOLOGY
- Two Alleles of NF-κB in the Sea Anemone Nematostella vectensis Are Widely Dispersed in Nature and Encode Proteins with Distinct Activities
- (2009) James C. Sullivan et al. PLoS One
- Phylogenetic relationships among sea anemones (Cnidaria: Anthozoa: Actiniaria)
- (2008) M. Daly et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- A Rapid Bootstrap Algorithm for the RAxML Web Servers
- (2008) Alexandros Stamatakis et al. SYSTEMATIC BIOLOGY
- iPath: interactive exploration of biochemical pathways and networks
- (2008) Ivica Letunic et al. TRENDS IN BIOCHEMICAL SCIENCES
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now