Production of a reference transcriptome and transcriptomic database (EdwardsiellaBase) for the lined sea anemone, Edwardsiella lineata, a parasitic cnidarian

Characterization of differential transcript abundance through time during Nematostella vectensis development

(2013) Rebecca Helm et al.   BMC GENOMICS

A comparison across non-model animals suggests an optimal sequencing depth for de novo transcriptome assembly

(2013) Warren R Francis et al.   BMC GENOMICS

The genomes of four tapeworm species reveal adaptations to parasitism

(2013) Isheng J. Tsai et al.   NATURE

Isolation of DNA, RNA and protein from the starlet sea anemone Nematostella vectensis

(2013) Derek J Stefanik et al.   Nature Protocols

Collecting, rearing, spawning and inducing regeneration of the starlet sea anemone, Nematostella vectensis

(2013) Derek J Stefanik et al.   Nature Protocols

Characterizing the spatiotemporal expression of RNAs and proteins in the starlet sea anemone, Nematostella vectensis

(2013) Francis S Wolenski et al.   Nature Protocols

PhyloBayes MPI: Phylogenetic Reconstruction with Infinite Mixtures of Profiles in a Parallel Environment

(2013) Nicolas Lartillot et al.   SYSTEMATIC BIOLOGY

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

Developing the anemone Aiptasia as a tractable model for cnidarian-dinoflagellate symbiosis: the transcriptome of aposymbiotic A. pallida

(2012) Erik M Lehnert et al.   BMC GENOMICS

Visualizing next-generation sequencing data with JBrowse

(2012) O. Westesson et al.   BRIEFINGS IN BIOINFORMATICS

NF-κB is required for cnidocyte development in the sea anemone Nematostella vectensis

(2012) Francis S. Wolenski et al.   DEVELOPMENTAL BIOLOGY

NF-κB: where did it come from and why?

(2012) Thomas D. Gilmore et al.   IMMUNOLOGICAL REVIEWS

PcarnBase: Development of a Transcriptomic Database for the Brain Coral Platygyra carnosus

(2012) Jin Sun et al.   MARINE BIOTECHNOLOGY

Whole Transcriptome Analysis of the CoralAcropora milleporaReveals Complex Responses to CO2-driven Acidification during the Initiation of Calcification

(2012) A. MOYA et al.   MOLECULAR ECOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Deep sequencing reveals unique small RNA repertoire that is regulated during head regeneration in Hydra magnipapillata

(2012) Srikar Krishna et al.   NUCLEIC ACIDS RESEARCH

Production of a reference transcriptome and transcriptomic database (PocilloporaBase) for the cauliflower coral, Pocillopora damicornis

(2011) Nikki Traylor-Knowles et al.   BMC GENOMICS

Estimation of divergence times in cnidarian evolution based on mitochondrial protein-coding genes and the fossil record

(2011) Eunji Park et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Using the Acropora digitifera genome to understand coral responses to environmental change

(2011) Chuya Shinzato et al.   NATURE

Morphological and Molecular Analysis of the Nematostella vectensis Cnidom

(2011) Claudia Zenkert et al.   PLoS One

Differential Gene Expression in the Siphonophore Nanomia bijuga (Cnidaria) Assessed with Multiple Next-Generation Sequencing Workflows

(2011) Stefan Siebert et al.   PLoS One

Gene Discovery in the Threatened Elkhorn Coral: 454 Sequencing of the Acropora palmata Transcriptome

(2011) Nicholas R. Polato et al.   PLoS One

The Cambrian Conundrum: Early Divergence and Later Ecological Success in the Early History of Animals

(2011) D. H. Erwin et al.   SCIENCE

Running with the Red Queen: Host-Parasite Coevolution Selects for Biparental Sex

(2011) L. T. Morran et al.   SCIENCE

Early evolution of the LIM homeobox gene family

(2010) Mansi Srivastava et al.   BMC BIOLOGY

Characterization of the Core Elements of the NF- B Signaling Pathway of the Sea Anemone Nematostella vectensis

(2010) F. S. Wolenski et al.   MOLECULAR AND CELLULAR BIOLOGY

Improved Phylogenomic Taxon Sampling Noticeably Affects Nonbilaterian Relationships

(2010) K. S. Pick et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenetic Relationships among Deep-Sea and Chemosynthetic Sea Anemones: Actinoscyphiidae and Actinostolidae (Actiniaria: Mesomyaria)

(2010) Estefanía Rodríguez et al.   PLoS One

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

(2009) Nicolas Lartillot et al.   BIOINFORMATICS

Nuclear receptor complement of the cnidarian Nematostella vectensis: phylogenetic relationships and developmental expression patterns

(2009) Adam M Reitzel et al.   BMC EVOLUTIONARY BIOLOGY

Comprehensive EST analysis of the symbiotic sea anemone, Anemonia viridis

(2009) Cécile Sabourault et al.   BMC GENOMICS

Generation and analysis of transcriptomic resources for a model system on the rise: the sea anemone Aiptasia pallida and its dinoflagellate endosymbiont

(2009) Shinichi Sunagawa et al.   BMC GENOMICS

Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx

(2009) Eli Meyer et al.   BMC GENOMICS

The transcriptome of the colonial marine hydroid Hydractinia echinata

(2009) Jorge Soza-Ried et al.   FEBS Journal

Where's the glass? Biomarkers, molecular clocks, and microRNAs suggest a 200-Myr missing Precambrian fossil record of siliceous sponge spicules

(2009) E. A. SPERLING et al.   Geobiology

Comparative Anatomy and Histology of Developmental and Parasitic Stages in the Life Cycle of the Lined Sea Anemone Edwardsiella lineata

(2009) Adam M. Reitzel et al.   JOURNAL OF PARASITOLOGY

The host transcriptome remains unaltered during the establishment of coral-algal symbioses

(2009) CHRISTIAN R. VOOLSTRA et al.   MOLECULAR ECOLOGY

Two Alleles of NF-κB in the Sea Anemone Nematostella vectensis Are Widely Dispersed in Nature and Encode Proteins with Distinct Activities

(2009) James C. Sullivan et al.   PLoS One

Phylogenetic relationships among sea anemones (Cnidaria: Anthozoa: Actiniaria)

(2008) M. Daly et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY

iPath: interactive exploration of biochemical pathways and networks

(2008) Ivica Letunic et al.   TRENDS IN BIOCHEMICAL SCIENCES