Tangram: a comprehensive toolbox for mobile element insertion detection
Published 2014 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Tangram: a comprehensive toolbox for mobile element insertion detection
Authors
Keywords
Structural variation, Mobile element insertion, Retrotransposon, Endogenous retrovirus, L1, Alu, SVA, High-throughput sequencing
Journal
BMC GENOMICS
Volume 15, Issue 1, Pages 795
Publisher
Springer Nature
Online
2014-09-16
DOI
10.1186/1471-2164-15-795
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
- (2014) Wan-Ping Lee et al. PLoS One
- DELLY: structural variant discovery by integrated paired-end and split-read analysis
- (2012) T. Rausch et al. BIOINFORMATICS
- Copy Number Variation detection from 1000 Genomes project exon capture sequencing data
- (2012) Jiantao Wu et al. BMC BIOINFORMATICS
- Landscape of Somatic Retrotransposition in Human Cancers
- (2012) E. Lee et al. SCIENCE
- LINE-1 Elements in Structural Variation and Disease
- (2011) Christine R. Beck et al. Annual Review of Genomics and Human Genetics
- BamTools: a C++ API and toolkit for analyzing and managing BAM files
- (2011) D. W. Barnett et al. BIOINFORMATICS
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- Mapping copy number variation by population-scale genome sequencing
- (2011) Ryan E. Mills et al. NATURE
- Discovery and genotyping of genome structural polymorphism by sequencing on a population scale
- (2011) Robert E Handsaker et al. NATURE GENETICS
- A Comprehensive Map of Mobile Element Insertion Polymorphisms in Humans
- (2011) Chip Stewart et al. PLoS Genetics
- Repetitive Elements May Comprise Over Two-Thirds of the Human Genome
- (2011) A. P. Jason de Koning et al. PLoS Genetics
- Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery
- (2010) Fereydoun Hormozdiari et al. BIOINFORMATICS
- Mobile element scanning (ME-Scan) by targeted high-throughput sequencing
- (2010) David J Witherspoon et al. BMC GENOMICS
- Mobile Interspersed Repeats Are Major Structural Variants in the Human Genome
- (2010) Cheng Ran Lisa Huang et al. CELL
- Natural Mutagenesis of Human Genomes by Endogenous Retrotransposons
- (2010) Rebecca C. Iskow et al. CELL
- Whole-genome resequencing allows detection of many rare LINE-1 insertion alleles in humans
- (2010) A. D. Ewing et al. GENOME RESEARCH
- SNP detection and genotyping from low-coverage sequencing data on multiple diploid samples
- (2010) S. Q. Le et al. GENOME RESEARCH
- Alu repeat discovery and characterization within human genomes
- (2010) F. Hormozdiari et al. GENOME RESEARCH
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- A map of human genome variation from population-scale sequencing
- (2010) Richard M. Durbin et al. NATURE
- Diversity of Human Copy Number Variation and Multicopy Genes
- (2010) Peter H. Sudmant et al. SCIENCE
- A mobile threat to genome stability: The impact of non-LTR retrotransposons upon the human genome
- (2010) Miriam K. Konkel et al. SEMINARS IN CANCER BIOLOGY
- Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
- (2010) Jeremy Goecks et al. GENOME BIOLOGY
- Copy Number Variation in Human Health, Disease, and Evolution
- (2009) Feng Zhang et al. Annual Review of Genomics and Human Genetics
- Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads
- (2009) K. Ye et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Mobile elements create structural variation: Analysis of a complete human genome
- (2009) J. Xing et al. GENOME RESEARCH
- The impact of retrotransposons on human genome evolution
- (2009) Richard Cordaux et al. NATURE REVIEWS GENETICS
- The genetic architecture of Down syndrome phenotypes revealed by high-resolution analysis of human segmental trisomies
- (2009) J. O. Korbel et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- BatchPrimer3: A high throughput web application for PCR and sequencing primer design
- (2008) Frank M You et al. BMC BIOINFORMATICS
- Mammalian non-LTR retrotransposons: For better or worse, in sickness and in health
- (2008) V. P. Belancio et al. GENOME RESEARCH
- Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing
- (2008) Peter J Campbell et al. NATURE GENETICS
- Deletion polymorphism upstream of IRGM associated with altered IRGM expression and Crohn's disease
- (2008) Steven A McCarroll et al. NATURE GENETICS
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now