Categorizer: a tool to categorize genes into user-defined biological groups based on semantic similarity

NeuroGeM, a knowledgebase of genetic modifiers in neurodegenerative diseases

(2013) Dokyun Na et al.   BMC Medical Genomics

A novel insight into Gene Ontology semantic similarity

(2013) Yungang Xu et al.   GENOMICS

Improving the Measurement of Semantic Similarity between Gene Ontology Terms and Gene Products: Insights from an Edge- and IC-Based Hybrid Method

(2013) Xiaomei Wu et al.   PLoS One

Proteomic Analysis of Wild-type and Mutant Huntingtin-associated Proteins in Mouse Brains Identifies Unique Interactions and Involvement in Protein Synthesis

(2012) Brady P. Culver et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Improving disease gene prioritization using the semantic similarity of Gene Ontology terms

(2010) Andreas Schlicker et al.   BIOINFORMATICS

A Genomewide RNA Interference Screen for Modifiers of Aggregates Formation by Mutant Huntingtin in Drosophila

(2010) S. Zhang et al.   GENETICS

Next generation software for functional trend analysis

(2009) G. F. Berriz et al.   BIOINFORMATICS

G-SESAME: web tools for GO-term-based gene similarity analysis and knowledge discovery

(2009) Z. Du et al.   NUCLEIC ACIDS RESEARCH

RNAi Screening in Drosophila Cells Identifies New Modifiers of Mutant Huntingtin Aggregation

(2009) Joanna Doumanis et al.   PLoS One

Semantic Similarity in Biomedical Ontologies

(2009) Catia Pesquita et al.   PLoS Computational Biology

Gene–disease relationship discovery based on model-driven data integration and database view definition

(2008) S. Yilmaz et al.   BIOINFORMATICS

Defining functional distances over Gene Ontology

(2008) Angela del Pozo et al.   BMC BIOINFORMATICS

Inhibition of specific HDACs and sirtuins suppresses pathogenesis in a Drosophila model of Huntington’s disease

(2008) Judit Pallos et al.   HUMAN MOLECULAR GENETICS

Heat Shock Transcription Factor 1-activating Compounds Suppress Polyglutamine-induced Neurodegeneration through Induction of Multiple Molecular Chaperones

(2008) Nobuhiro Fujikake et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH