Systematic exploration of autonomous modules in noisy microRNA-target networks for testing the generality of the ceRNA hypothesis
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Title
Systematic exploration of autonomous modules in noisy microRNA-target networks for testing the generality of the ceRNA hypothesis
Authors
Keywords
Competing endogeneous RNA, MicroRNA-target bicluster, MicroRNA network
Journal
BMC GENOMICS
Volume 15, Issue 1, Pages 1178
Publisher
Springer Nature
Online
2015-06-18
DOI
10.1186/1471-2164-15-1178
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Note: Only part of the references are listed.- A c-Myc-MicroRNA functional feedback loop affects hepatocarcinogenesis
- (2013) Han Han et al. HEPATOLOGY
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- Roles for MicroRNAs in Conferring Robustness to Biological Processes
- (2012) Margaret S. Ebert et al. CELL
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- Landscape of transcription in human cells
- (2012) Sarah Djebali et al. NATURE
- Senescence is an endogenous trigger for microRNA-directed transcriptional gene silencing in human cells
- (2012) Moussa Benhamed et al. NATURE CELL BIOLOGY
- COXPRESdb: a database of comparative gene coexpression networks of eleven species for mammals
- (2012) Takeshi Obayashi et al. NUCLEIC ACIDS RESEARCH
- Genenames.org: the HGNC resources in 2013
- (2012) Kristian A. Gray et al. NUCLEIC ACIDS RESEARCH
- A Lasso regression model for the construction of microRNA-target regulatory networks
- (2011) Yiming Lu et al. BIOINFORMATICS
- A novel computational framework for simultaneous integration of multiple types of genomic data to identify microRNA-gene regulatory modules
- (2011) Shihua Zhang et al. BIOINFORMATICS
- ceRNAs: miRNA Target Mimic Mimics
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- (2011) Pavel Sumazin et al. CELL
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- A Long Noncoding RNA Controls Muscle Differentiation by Functioning as a Competing Endogenous RNA
- (2011) Marcella Cesana et al. CELL
- In Vivo Identification of Tumor- Suppressive PTEN ceRNAs in an Oncogenic BRAF-Induced Mouse Model of Melanoma
- (2011) Florian A. Karreth et al. CELL
- A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language?
- (2011) Leonardo Salmena et al. CELL
- TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support
- (2011) T. Vergoulis et al. NUCLEIC ACIDS RESEARCH
- From Structure Prediction to Genomic Screens for Novel Non-Coding RNAs
- (2011) Jan Gorodkin et al. PLoS Computational Biology
- Identifying functional miRNA–mRNA regulatory modules with correspondence latent dirichlet allocation
- (2010) Bing Liu et al. BIOINFORMATICS
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- (2010) Hyeyoung Min et al. EXPERIMENTAL AND MOLECULAR MEDICINE
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- (2010) Marshall Thomas et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Module Network Inference from a Cancer Gene Expression Data Set Identifies MicroRNA Regulated Modules
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- Lost in translation: an assessment and perspective for computational microRNA target identification
- (2009) Panagiotis Alexiou et al. BIOINFORMATICS
- mimiRNA: a microRNA expression profiler and classification resource designed to identify functional correlations between microRNAs and their targets
- (2009) William Ritchie et al. BIOINFORMATICS
- Identification of microRNA expression patterns and definition of a microRNA/mRNA regulatory network in distinct molecular groups of multiple myeloma
- (2009) M. Lionetti et al. BLOOD
- MicroRNAs: Target Recognition and Regulatory Functions
- (2009) David P. Bartel CELL
- Discovery of functional miRNA–mRNA regulatory modules with computational methods
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- miRGen 2.0: a database of microRNA genomic information and regulation
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- Identification of microRNA regulatory modules in Arabidopsis via a probabilistic graphical model
- (2008) Je-Gun Joung et al. BIOINFORMATICS
- miRNAminer: A tool for homologous microRNA gene search
- (2008) Shay Artzi et al. BMC BIOINFORMATICS
- Downregulation of CCND1 and CDK6 by miR-34a induces cell cycle arrest
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- (2008) Marc R Friedländer et al. NATURE BIOTECHNOLOGY
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